miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40988_mtr-MIR2670b:mirbase
Length = 224
Score = 135 bits (68), Expect = 2e-32
Identities = 174/214 (81%), Gaps = 2/214 (0%)
Strand = Plus / Plus
Query: 3 tgatcaaacttttttggggtaaaatagtgagtagccgatttggtgaagtgatcaaccatt 62
||||||||||| || ||| |||||||||||||||| || || | ||||||||| ||||||
Sbjct: 1 tgatcaaacttcttcgggataaaatagtgagtagctgacttagggaagtgatcgaccatt 60
Query: 63 ctgataagtttaaatctgnnnnnnnnnactcctgaaactttttaccatgggtaaaaggat 122
|||||||||||||||| ||||| |||||||||||| ||||||||| |||
Sbjct: 61 gggataagtttaaatctgctattttttactccataaactttttaccgtgggtaaaaagat 120
Query: 123 ttttcttggggtatnnnnnnnnnnccagatttaaatttagcccaagggttgatgaggtat 182
| || ||||||||| ||||| ||||||||||||||||||||| ||| ||||
Sbjct: 121 tcttgttggggtataaaaaaaa--ccagacttaaatttagcccaagggttggtgatgtat 178
Query: 183 tttcctcaagaaggttgctcactattttacccca 216
|||| ||||||||||||||||||||||||||||
Sbjct: 179 tttctccaagaaggttgctcactattttacccca 212
>40989_mtr-MIR2670c:mirbase
Length = 222
Score = 129 bits (65), Expect = 1e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 151 atttaaatttagcccaagggttgatgaggtattttcctcaagaaggttgctcactatttt 210
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145 atttaaatttagcccaagggttgatgatgtattttcctcaagaaggttgctcactatttt 204
Query: 211 accccaaga 219
|||||||||
Sbjct: 205 accccaaga 213
>40990_mtr-MIR2670d:mirbase
Length = 224
Score = 107 bits (54), Expect = 4e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 147 ccagatttaaatttagcccaagggttgatgaggtattttcctcaagaaggttgctcacta 206
||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||
Sbjct: 143 ccagatttaaatttagctcaatggttgatgatgtattttccccaagaaggttgctcacta 202
Query: 207 ttttacccca 216
||||||||||
Sbjct: 203 ttttacccca 212
