miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40988_mtr-MIR2670b:mirbase
Length = 224
Score = 178 bits (90), Expect = 1e-45
Identities = 179/212 (84%)
Strand = Plus / Plus
Query: 1 tgatcaatcttcttcggggtaaaatagtgagtagccgacttagggaagtaatcaaccctt 60
||||||| |||||||||| |||||||||||||||| ||||||||||||| ||| ||| ||
Sbjct: 1 tgatcaaacttcttcgggataaaatagtgagtagctgacttagggaagtgatcgaccatt 60
Query: 61 gggataagtttaaatatccttttttaaaccccagaaactttttaccgttggtaaaaataa 120
||||||||||||||| | || |||| || ||| |||||||||||||| |||||||| |
Sbjct: 61 gggataagtttaaatctgctattttttactccataaactttttaccgtgggtaaaaagat 120
Query: 121 tcttcttcgggtnnnnnnnnnnccagatttaaatttagctcaatggttgatgatgtattt 180
|||| || |||| ||||| ||||||||||| ||| ||||| ||||||||||
Sbjct: 121 tcttgttggggtataaaaaaaaccagacttaaatttagcccaagggttggtgatgtattt 180
Query: 181 tccccaagaaggttgctcactattttacccca 212
|| |||||||||||||||||||||||||||||
Sbjct: 181 tctccaagaaggttgctcactattttacccca 212
>40989_mtr-MIR2670c:mirbase
Length = 222
Score = 133 bits (67), Expect = 6e-32
Identities = 172/205 (83%), Gaps = 4/205 (1%)
Strand = Plus / Plus
Query: 9 cttcttcggggtaaaatagtgagtagccgacttagggaagtaatcaacccttgggataag 68
||||||||||| ||| |||||||||||||| || ||||||| |||||||| | |||||||
Sbjct: 9 cttcttcggggcaaa-tagtgagtagccgatttggggaagtgatcaacccctaggataag 67
Query: 69 tttaaatatccttttttaaaccccagaaactttttaccgttggtaaaaataatcttcttc 128
||||||| | |||||| | ||||||| |||||||||||| | |||||| | |||||||
Sbjct: 68 tttaaatttgtttttttta-ccccagagactttttaccgtggctaaaaaga-tcttcttg 125
Query: 129 ggg-tnnnnnnnnnnccagatttaaatttagctcaatggttgatgatgtattttccccaa 187
||| | ||| ||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 126 ggggtataaaaagaaccatatttaaatttagcccaagggttgatgatgtattttcctcaa 185
Query: 188 gaaggttgctcactattttacccca 212
|||||||||||||||||||||||||
Sbjct: 186 gaaggttgctcactattttacccca 210
>40987_mtr-MIR2670a:mirbase
Length = 228
Score = 121 bits (61), Expect = 2e-28
Identities = 174/214 (81%), Gaps = 2/214 (0%)
Strand = Plus / Plus
Query: 1 tgatcaatcttcttcggggtaaaatagtgagtagccgacttagggaagtaatcaaccctt 60
||||||| ||| || ||||||||||||||||||||||| || | ||||| ||||||| ||
Sbjct: 3 tgatcaaacttttttggggtaaaatagtgagtagccgatttggtgaagtgatcaaccatt 62
Query: 61 gggataagtttaaatatccttttttaaaccccagaaactttttaccgttggtaaaaataa 120
||||||||||||| | |||||| || || ||||||||||||| | ||||||| |
Sbjct: 63 ctgataagtttaaatctgtttttttttactcctgaaactttttaccatgggtaaaaggat 122
Query: 121 tcttcttcgggtnnnnnnnnnn--ccagatttaaatttagctcaatggttgatgatgtat 178
| ||||| |||| ||||||||||||||||| ||| ||||||||| ||||
Sbjct: 123 ttttcttggggtataaaaaaaaaaccagatttaaatttagcccaagggttgatgaggtat 182
Query: 179 tttccccaagaaggttgctcactattttacccca 212
||||| ||||||||||||||||||||||||||||
Sbjct: 183 tttcctcaagaaggttgctcactattttacccca 216
