miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41134_tcc-MIR394a:mirbase
          Length = 120

 Score =  113 bits (57), Expect = 4e-26
 Identities = 112/126 (88%), Gaps = 7/126 (5%)
 Strand = Plus / Plus

                                                                       
Query: 23  agggcttcttacagagtttattggcattctgtccacctccccatcatggaaaaagtccgt 82
           ||||||||||||||||||||||||||||||||||||||||| ||||  |||||  ||| |
Sbjct: 1   agggcttcttacagagtttattggcattctgtccacctccc-atcacagaaaa--tccct 57

                                                                       
Query: 83  att-tttcccctctggtttttcatggaggtgggcatactgccaactgtgctctgttggct 141
            |  ||||||||||    ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 58  ttcctttcccctctc---tttcatggaggtgggcatactgccaactgggctctgttggct 114

                 
Query: 142 tctctt 147
           ||||||
Sbjct: 115 tctctt 120




>41424_ptc-MIR394b:mirbase
          Length = 147

 Score = 89.7 bits (45), Expect = 6e-19
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                   
Query: 6  tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
          ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1  tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcc 57



 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 104 atggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 163
           ||||||||||||||||||||||| | ||||||||||  ||||||||||||| ||| ||||
Sbjct: 88  atggaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaaccctcgtga 147




>41423_ptc-MIR394b:mirbase
          Length = 147

 Score = 89.7 bits (45), Expect = 6e-19
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                   
Query: 6  tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
          ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1  tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcc 57



 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                       
Query: 104 atggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 163
           ||||||||||||||||||||||| | ||||||||||  ||||||||||||| ||| ||||
Sbjct: 88  atggaggtgggcatactgccaaccgagctctgttggtctctctttgtaaaaccctcgtga 147




>41239_csi-MIR394:mirbase
          Length = 147

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 102 tcatggaggtgggcatactgccaactgtgctctgttggcttctctt 147
           ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 102 tcatggaggtgggcatactgccaactgagctctgttggcttctctt 147



 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 27 cttcttacagagtttattggcattctgtccacctcc 62
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  cttcttacagagtttattggcattctgtccacctcc 36




>41422_ptc-MIR394a:mirbase
          Length = 147

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                   
Query: 6  tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
          ||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1  tcatgtgggttttgcaaagggtttcttacagagttttttggcattctgtccacctcc 57



 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 105 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 163
           |||||||||||||||||||||||| ||||||||||  ||||||||||||| ||| ||||
Sbjct: 89  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147




>41421_ptc-MIR394a:mirbase
          Length = 147

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                   
Query: 6  tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
          ||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1  tcatgtgggttttgcaaagggtttcttacagagttttttggcattctgtccacctcc 57



 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 105 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaatccttgtga 163
           |||||||||||||||||||||||| ||||||||||  ||||||||||||| ||| ||||
Sbjct: 89  tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147




>40471_gma-MIR394a:mirbase
          Length = 157

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 6  tcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
          ||||| ||||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct: 2  tcatgagggtttagcaaagtgttgctaacagagtttattggcattctgtccacctcc 58



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                             
Query: 104 atggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaa 153
           |||||||||||||||||| |||||| |||||||||||| | |||||||||
Sbjct: 97  atggaggtgggcatactgtcaactgagctctgttggctacactttgtaaa 146




>41644_vvi-MIR394b:mirbase
          Length = 93

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 33 acagagtttattggcattctgtccacctccc 63
          |||||||||||||||||||||||||||||||
Sbjct: 1  acagagtttattggcattctgtccacctccc 31



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 105 tggaggtgggcatactgccaac 126
           ||||||||||||||||||||||
Sbjct: 61  tggaggtgggcatactgccaac 82




>40472_gma-MIR394b:mirbase
          Length = 104

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 33 acagagtttattggcattctgtccacctcc 62
          ||||||||||||||||||||||||||||||
Sbjct: 3  acagagtttattggcattctgtccacctcc 32



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 105 tggaggtgggcatactgccaactgtgctctgttg 138
           ||||||||||||||||| |||||| | |||||||
Sbjct: 71  tggaggtgggcatactgtcaactgagttctgttg 104




>41776_bdi-MIR394:mirbase
          Length = 200

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 105 tggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaa 154
           |||||||||||||||||||||  | ||| ||| |||||| ||||||||||
Sbjct: 125 tggaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaaa 174



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72




>39867_aly-MIR394a:mirbase
          Length = 220

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                     
Query: 4  tttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctcc 62
          ||||||| ||||||  ||||| | ||||||||||  |  ||||||||||||||||||||
Sbjct: 29 tttcatgagggtttgacaaagagtttcttacagacatctttggcattctgtccacctcc 87




>39868_aly-MIR394b:mirbase
          Length = 160

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 29 tcttacagagtttattggcattctgtccacctcc 62
          |||||||||| |  ||||||||||||||||||||
Sbjct: 27 tcttacagagatctttggcattctgtccacctcc 60




>42790_zma-MIR394b:mirbase
          Length = 122

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 43 ttggcattctgtccacctccc 63
          |||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 105 tggaggtgggcatactgccaa 125
           |||||||||||||||||||||
Sbjct: 83  tggaggtgggcatactgccaa 103




>42789_zma-MIR394a:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 105 tggaggtgggcatactgccaa 125
           |||||||||||||||||||||
Sbjct: 87  tggaggtgggcatactgccaa 107



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>42569_sbi-MIR394b:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 105 tggaggtgggcatactgccaa 125
           |||||||||||||||||||||
Sbjct: 53  tggaggtgggcatactgccaa 73



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 2  ttggcattctgtccacctcc 21




>42000_osa-MIR394:mirbase
          Length = 110

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 105 tggaggtgggcatactgccaa 125
           |||||||||||||||||||||
Sbjct: 76  tggaggtgggcatactgccaa 96



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33




>40078_ath-MIR394b:mirbase
          Length = 121

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 30 cttacagagtttattggcattctgtccacctcc 62
          ||||||||| |  ||||||||||||||||||||
Sbjct: 1  cttacagagatctttggcattctgtccacctcc 33



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 106 ggaggtgggcatactgccaa 125
           ||||||||||||||||||||
Sbjct: 88  ggaggtgggcatactgccaa 107




>42568_sbi-MIR394a:mirbase
          Length = 110

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>41645_vvi-MIR394c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30




>41643_vvi-MIR394a:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30




>41135_tcc-MIR394b:mirbase
          Length = 125

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40




>41056_ghr-MIR394b:mirbase
          Length = 165

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54




>40402_ahy-MIR394:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41




>40077_ath-MIR394a:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 ttggcattctgtccacctcc 62
          ||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33