miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41067_ghr-MIR827a:mirbase
Length = 155
Score = 291 bits (147), Expect = 1e-79
Identities = 153/155 (98%)
Strand = Plus / Plus
Query: 19 atgcattattgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 78
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcattgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 60
Query: 79 ttgttcaagcagtttttggataatcgaaccgatagaatacacccgcagaaatgatgttta 138
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 ttgttcaagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgttta 120
Query: 139 gatgaccatcaacaaacaacttcatcttattgcat 173
|||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgaccatcaacaaacaacttcatcttattgcat 155
>41069_ghr-MIR827c:mirbase
Length = 155
Score = 283 bits (143), Expect = 2e-77
Identities = 152/155 (98%)
Strand = Plus / Plus
Query: 19 atgcattattgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 78
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcattgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 60
Query: 79 ttgttcaagcagtttttggataatcgaaccgatagaatacacccgcagaaatgatgttta 138
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 ttgttcaagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgttta 120
Query: 139 gatgaccatcaacaaacaacttcatcttattgcat 173
||||||||||||||||||||||| |||||||||||
Sbjct: 121 gatgaccatcaacaaacaacttcctcttattgcat 155
>41160_tcc-MIR827:mirbase
Length = 148
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 atgcattattgaatgtgtttgtttatggtcatct 52
|||||||||||||| |||||||| ||||||||||
Sbjct: 6 atgcattattgaatatgtttgttgatggtcatct 39
Score = 52.0 bits (26), Expect = 2e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 128 aatgatgtttagatgaccatcaacaaacaacttcatcttattgcat 173
||||||| ||||||||||||||||||||| |||||| | ||||||
Sbjct: 100 aatgatgcttagatgaccatcaacaaacactttcatcgttttgcat 145
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 28 tgaatgtgtttgtttatggtcatctaagc 56
|||| ||||||||| ||||||||||||||
Sbjct: 134 tgaaagtgtttgttgatggtcatctaagc 106
>40145_ath-MIR827:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 134 gtttagatgaccatcaacaaac 155
||||||||||||||||||||||
Sbjct: 104 gtttagatgaccatcaacaaac 125
>39909_aly-MIR827:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 134 gtttagatgaccatcaacaaac 155
||||||||||||||||||||||
Sbjct: 118 gtttagatgaccatcaacaaac 139
>41265_csi-MIR827:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 136 ttagatgaccatcaacaaaca 156
|||||||||||||||||||||
Sbjct: 61 ttagatgaccatcaacaaaca 81
