miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41067_ghr-MIR827a:mirbase
Length = 155
Score = 299 bits (151), Expect = 3e-82
Identities = 154/155 (99%)
Strand = Plus / Plus
Query: 1 atgcattgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcattgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 60
Query: 61 ttgttcaagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttcaagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgttta 120
Query: 121 gatgaccatcaacaaacaacttcctcttattgcat 155
||||||||||||||||||||||| |||||||||||
Sbjct: 121 gatgaccatcaacaaacaacttcatcttattgcat 155
>41068_ghr-MIR827b:mirbase
Length = 192
Score = 283 bits (143), Expect = 2e-77
Identities = 152/155 (98%)
Strand = Plus / Plus
Query: 1 atgcattgttgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 atgcattattgaatgtgtttgtttatggtcatctaagccatttttcatctcgccaattct 78
Query: 61 ttgttcaagcagtttttggataatcgaaccgatagactacacccgcagaaatgatgttta 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 79 ttgttcaagcagtttttggataatcgaaccgatagaatacacccgcagaaatgatgttta 138
Query: 121 gatgaccatcaacaaacaacttcctcttattgcat 155
||||||||||||||||||||||| |||||||||||
Sbjct: 139 gatgaccatcaacaaacaacttcatcttattgcat 173
>41160_tcc-MIR827:mirbase
Length = 148
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 110 aatgatgtttagatgaccatcaacaaaca 138
||||||| |||||||||||||||||||||
Sbjct: 100 aatgatgcttagatgaccatcaacaaaca 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 10 tgaatgtgtttgtttatggtcatctaagc 38
|||| ||||||||| ||||||||||||||
Sbjct: 134 tgaaagtgtttgttgatggtcatctaagc 106
>40145_ath-MIR827:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 116 gtttagatgaccatcaacaaac 137
||||||||||||||||||||||
Sbjct: 104 gtttagatgaccatcaacaaac 125
>39909_aly-MIR827:mirbase
Length = 197
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 116 gtttagatgaccatcaacaaac 137
||||||||||||||||||||||
Sbjct: 118 gtttagatgaccatcaacaaac 139
>41265_csi-MIR827:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 118 ttagatgaccatcaacaaaca 138
|||||||||||||||||||||
Sbjct: 61 ttagatgaccatcaacaaaca 81
