miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40364_rco-MIR171f:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 116 tgttttgattgagccgtgccaatatc 141
||||||||||||||||||||||||||
Sbjct: 81 tgttttgattgagccgtgccaatatc 106
>41985_osa-MIR171e:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatcctagtgc 148
||||||||||||||||||||| ||||||
Sbjct: 89 tgattgagccgtgccaatatcttagtgc 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gatgttggctcggttcactcagac 44
||||||||||||| ||||||||||
Sbjct: 11 gatgttggctcggctcactcagac 34
>41982_osa-MIR171b:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 118 ttttgattgagccgtgccaatatc 141
||||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatc 90
>41890_hvu-MIR171:mirbase
Length = 173
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatcctagtgc 148
||||||||||||||||||||| ||||||
Sbjct: 112 tgattgagccgtgccaatatcttagtgc 139
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 13 gtcactacgatgttggctcggttcactcagac 44
||||||| |||||||||||| ||||||||||
Sbjct: 47 gtcactatgatgttggctcgactcactcagac 78
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 118 ttttgattgagccgtgccaatatc 141
||||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatc 90
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatcctagtgc 148
||||||||||||||||||||| ||||||
Sbjct: 101 tgattgagccgtgccaatatcttagtgc 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 cgatgttggctcggttcactcagacaaaa 48
|||||||||| ||||||||||||| ||||
Sbjct: 10 cgatgttggcccggttcactcagagaaaa 38
>41216_crt-MIR171:mirbase
Length = 201
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 118 ttttgattgagccgtgccaatatc 141
||||||||||||||||||||||||
Sbjct: 158 ttttgattgagccgtgccaatatc 181
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 118 ttttgattgagccgtgccaatatc 141
||||||||||||||||||||||||
Sbjct: 81 ttttgattgagccgtgccaatatc 104
>40362_rco-MIR171d:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 gatgttggctcggttcactcagacaaaa 48
||||||||| ||||||||||||||||||
Sbjct: 4 gatgttggcccggttcactcagacaaaa 31
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatcctagt 146
||||||||||||||||||||||| ||||
Sbjct: 97 tttgattgagccgtgccaatatcttagt 124
>40359_rco-MIR171a:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 118 ttttgattgagccgtgccaatatc 141
||||||||||||||||||||||||
Sbjct: 61 ttttgattgagccgtgccaatatc 84
>42762_zma-MIR171b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatc 142
>41983_osa-MIR171c:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>41538_sly-MIR171a:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 98 tttgattgagccgtgccaatatc 120
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatc 91
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 21 gatgttggctcggttcactcagac 44
||||||||||||||||| ||||||
Sbjct: 100 gatgttggctcggttcattcagac 77
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gatgttggctcggttcactcagac 44
||||||||||||||||| ||||||
Sbjct: 1 gatgttggctcggttcattcagac 24
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatc 97
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatc 97
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>40697_mtr-MIR171c:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 ttttgattgagccgtgccaatat 140
|||||||||||||||||||||||
Sbjct: 77 ttttgattgagccgtgccaatat 99
>40457_gma-MIR171c:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatc 92
>40360_rco-MIR171b:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatc 83
>40318_bra-MIR171a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>40305_bol-MIR171a:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>40289_bna-MIR171e:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>40288_bna-MIR171d:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatc 88
>40062_ath-MIR171c:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>39851_aly-MIR171c:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 tttgattgagccgtgccaatatc 141
|||||||||||||||||||||||
Sbjct: 72 tttgattgagccgtgccaatatc 94
>42769_zma-MIR171i:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 ttgattgagccgtgccaatatc 141
||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatc 85
>42766_zma-MIR171f:mirbase
Length = 155
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 ttgattgagccgtgccaatatc 141
||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatc 135
>42765_zma-MIR171e:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatcctagt 146
||||||||||||||||||||| ||||
Sbjct: 87 tgattgagccgtgccaatatcttagt 112
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gatgttggctcggttcactcagac 44
||||||||||||| ||||||||||
Sbjct: 21 gatgttggctcggctcactcagac 44
>40363_rco-MIR171e:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatcc 142
||||||||||||||||||||||
Sbjct: 59 tgattgagccgtgccaatatcc 80
>42770_zma-MIR171j:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
>42764_zma-MIR171d:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatc 102
>42640_tae-MIR171a:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 13 gtcactacgatgttggctcggttcactcagac 44
||||||| |||||||||||| ||||||||||
Sbjct: 8 gtcactatgatgttggctcgactcactcagac 39
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 114 tgattgagccgtgccaatatc 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gatgttggctcggttcactcagac 44
||||||||||||| ||||||||||
Sbjct: 20 gatgttggctcggctcactcagac 43
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>41986_osa-MIR171f:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatc 117
>41984_osa-MIR171d:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>41874_far-MIR171:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 114 tgattgagccgtgccaatatc 134
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatc 75
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 75 tgattgagccgtgccaatatc 95
>40361_rco-MIR171c:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 121 tgattgagccgtgccaatatc 141
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
