miRNEST 2.0, an integrative microRNA resource :: BLAST
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 83.8 bits (42), Expect = 3e-17
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggttcttcttgct 124
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgatcctcatatagcgctatccatcctgagtttcatcggttcttcttgct 130
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 77.8 bits (39), Expect = 2e-15
Identities = 46/47 (97%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggttcttctt 121
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgatcctcatatagcgctatccatcctgagtttcatcggttcttctt 124
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 65.9 bits (33), Expect = 7e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 76 tgatcctcat-tagcgctatccatcctgagtttcatcggtt 115
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 74 tgatcctcatatagcgctatccatcctgagtttcatcggtt 114
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccattgatgatc 51
|||||||||||||||||||||||||||| |||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccatggatgatc 41
>40468_gma-MIR390a:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccattgatgatctt 53
|||| ||||||||||||||||||||||| |||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccatggatgatctt 43
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcat 110
|||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcat 89
>40467_gma-MIR390a:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccattgatgatctt 53
|||| ||||||||||||||||||||||| |||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccatggatgatctt 43
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcat 110
|||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcat 89
>41237_csi-MIR390:mirbase
Length = 154
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 3 agtatagaagagcctgttaagctcaggagggatagcgccat 43
|||| |||||| ||||||||||||||||||||||||||||
Sbjct: 3 agtaaagaagaatctgttaagctcaggagggatagcgccat 43
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgctct 126
||||||||||||||||||||||| | |||||||| ||||
Sbjct: 98 gcgctatccatcctgagtttcatggcttcttcttactct 136
>41640_vvi-MIR390:mirbase
Length = 140
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttc 119
|||||||| ||||||||||||| ||||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>40705_mtr-MIR390:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
||||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcat 110
|||||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagtttcat 98
>39862_aly-MIR390a:mirbase
Length = 129
Score = 54.0 bits (27), Expect = 3e-08
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 3 agtatagaagagcctgttaagctcaggagggatagcgccattgatgatctt 53
|||| |||||| |||| |||||||||||||||||||||| ||||||||||
Sbjct: 11 agtagagaagaatctgtaaagctcaggagggatagcgcca-tgatgatctt 60
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||||||||||||||||||||| || |||||||
Sbjct: 80 gcgctatccatcctgagtttcattggctcttctt 113
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgcc 41
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagttt 107
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgcc 41
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcat 110
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>40371_rco-MIR390a:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgcc 41
||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttca 109
||||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttca 103
>40072_ath-MIR390a:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||||||||||||||||||||| || |||||||
Sbjct: 69 gcgctatccatcctgagtttcattggctcttctt 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
|||||||| |||||||||||||| |||||||| ||||
Sbjct: 79 gcgctatctatcctgagtttcatgggttcttcctgct 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 16 ctgtaaagctcaggagggatagcgccat 43
>40372_rco-MIR390b:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 taagctcaggagggatagcgccattgatg 48
|||||||||||||||||||||||| ||||
Sbjct: 5 taagctcaggagggatagcgccatggatg 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 86 tagcgctatccatcctgagtttcat 110
|||||||||||||||||||||||||
Sbjct: 94 tagcgctatccatcctgagtttcat 118
>40294_bna-MIR390c:mirbase
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
||||||||||||||||||| ||| | |||||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttcttcttgct 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccat 45
>39863_aly-MIR390b:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
||||||||||||||||||| ||| | |||||||||||
Sbjct: 91 gcgctatccatcctgagttccatagcttcttcttgct 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccat 43
|||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccat 41
>40293_bna-MIR390b:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||| ||||||||||||||||| || |||||||
Sbjct: 67 gcgctgtccatcctgagtttcattggctcttctt 100
>40292_bna-MIR390a:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ctgttaagctcaggagggatagcgccat 43
|||| |||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccat 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttcttgct 124
||||||||||||||||||| || | |||||||||||
Sbjct: 95 gcgctatccatcctgagttctatggcttcttcttgct 131
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccatt 44
||||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccatt 39
>40073_ath-MIR390b:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgccat 43
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 88 gcgctatccatcctgagtttcatcggttcttctt 121
||||||||||||||||||| ||| | ||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttctt 120
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 aagctcaggagggatagcgcc 41
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 agctcaggagggatagcgcc 41
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
