miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 113 bits (57), Expect = 3e-26
Identities = 112/126 (88%), Gaps = 7/126 (5%)
Strand = Plus / Plus
Query: 1 agggcttcttacagagtttattggcattctgtccacctccc-atcacagaaaa--tccct 57
||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
Sbjct: 23 agggcttcttacagagtttattggcattctgtccacctccccatcatggaaaaagtccgt 82
Query: 58 ttcctttcccctctc---tttcatggaggtgggcatactgccaactgggctctgttggct 114
| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 83 att-tttcccctctggtttttcatggaggtgggcatactgccaactgtgctctgttggct 141
Query: 115 tctctt 120
||||||
Sbjct: 142 tctctt 147
>41239_csi-MIR394:mirbase
Length = 147
Score = 83.8 bits (42), Expect = 3e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 75 tcatggaggtgggcatactgccaactgggctctgttggcttctctt 120
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 102 tcatggaggtgggcatactgccaactgagctctgttggcttctctt 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 5 cttcttacagagtttattggcattctgtccacctcc 40
||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcttacagagtttattggcattctgtccacctcc 36
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 agggcttcttacagagtttattggcattctgtccacctcc 40
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 18 agggtttcttacagagtttattggcattctgtccacctcc 57
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 atggaggtgggcatactgccaactgggctctgttgg 112
||||||||||||||||||||||| | ||||||||||
Sbjct: 88 atggaggtgggcatactgccaaccgagctctgttgg 123
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 agggcttcttacagagtttattggcattctgtccacctcc 40
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 18 agggtttcttacagagtttattggcattctgtccacctcc 57
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 atggaggtgggcatactgccaactgggctctgttgg 112
||||||||||||||||||||||| | ||||||||||
Sbjct: 88 atggaggtgggcatactgccaaccgagctctgttgg 123
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 11 acagagtttattggcattctgtccacctcccatc 44
||||||||||||||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcccatc 34
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 agggcttcttacagagtttattggcattctgtccacctcc 40
|||| |||||||||||||| ||||||||||||||||||||
Sbjct: 18 agggtttcttacagagttttttggcattctgtccacctcc 57
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaactgggctctgttgg 112
|||||||||||||||||||||||| ||||||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttgg 123
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 agggcttcttacagagtttattggcattctgtccacctcc 40
|||| |||||||||||||| ||||||||||||||||||||
Sbjct: 18 agggtttcttacagagttttttggcattctgtccacctcc 57
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaactgggctctgttgg 112
|||||||||||||||||||||||| ||||||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttgg 123
>40472_gma-MIR394b:mirbase
Length = 104
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 acagagtttattggcattctgtccacctcc 40
||||||||||||||||||||||||||||||
Sbjct: 3 acagagtttattggcattctgtccacctcc 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaactgggctctgttg 111
||||||||||||||||| |||||| | |||||||
Sbjct: 71 tggaggtgggcatactgtcaactgagttctgttg 104
>40471_gma-MIR394a:mirbase
Length = 157
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 acagagtttattggcattctgtccacctcc 40
||||||||||||||||||||||||||||||
Sbjct: 29 acagagtttattggcattctgtccacctcc 58
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 77 atggaggtgggcatactgccaactgggctctgttggct 114
|||||||||||||||||| |||||| ||||||||||||
Sbjct: 97 atggaggtgggcatactgtcaactgagctctgttggct 134
>39868_aly-MIR394b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 7 tcttacagagtttattggcattctgtccacctcc 40
|||||||||| | ||||||||||||||||||||
Sbjct: 27 tcttacagagatctttggcattctgtccacctcc 60
>42790_zma-MIR394b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctccc 41
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaa 98
|||||||||||||||||||||
Sbjct: 83 tggaggtgggcatactgccaa 103
>42789_zma-MIR394a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaa 98
|||||||||||||||||||||
Sbjct: 87 tggaggtgggcatactgccaa 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaa 98
|||||||||||||||||||||
Sbjct: 53 tggaggtgggcatactgccaa 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42000_osa-MIR394:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaa 98
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>41776_bdi-MIR394:mirbase
Length = 200
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tggaggtgggcatactgccaa 98
|||||||||||||||||||||
Sbjct: 125 tggaggtgggcatactgccaa 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72
>40078_ath-MIR394b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 8 cttacagagtttattggcattctgtccacctcc 40
||||||||| | ||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcc 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79 ggaggtgggcatactgccaa 98
||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaa 107
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>39867_aly-MIR394a:mirbase
Length = 220
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 68 ttggcattctgtccacctcc 87
