miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 75.8 bits (38), Expect = 7e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 5 ttgttgcagagccaatttggcattctgtccacctccat 42
||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgttgcagagccaatttggcattctgtccacctccat 56
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 85 tggaggcggccagtatgtcaaacaggctctgtaaatttctc 125
|||||||||||||||||||||| || |||||||||||||||
Sbjct: 111 tggaggcggccagtatgtcaaatagactctgtaaatttctc 151
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 11 cagagccaatttggcattctgtccacctccatg 43
|||||||| ||||||||||||||||||||||||
Sbjct: 1 cagagccattttggcattctgtccacctccatg 33
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 cagagccaatttggcattctgtccacctccat 42
|||||||| |||||||||||||||||||||||
Sbjct: 1 cagagccattttggcattctgtccacctccat 32
>40402_ahy-MIR394:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 5 ttgttgcagagccaatttggcattctgtccacctcc 40
||||| || ||||| |||||||||||||||||||||
Sbjct: 6 ttgttccatagccattttggcattctgtccacctcc 41
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctccat 42
|||||||||||||||||||||||
Sbjct: 37 tttggcattctgtccacctccat 59
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctccat 42
|||||||||||||||||||||||
Sbjct: 37 tttggcattctgtccacctccat 59
>42000_osa-MIR394:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcc 40
|||||||||||||||||||||
Sbjct: 13 tttggcattctgtccacctcc 33
>41776_bdi-MIR394:mirbase
Length = 200
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcc 40
|||||||||||||||||||||
Sbjct: 52 tttggcattctgtccacctcc 72
>40472_gma-MIR394b:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcca 41
|||||||||||||||||||||
Sbjct: 13 ttggcattctgtccacctcca 33
>40471_gma-MIR394a:mirbase
Length = 157
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcca 41
|||||||||||||||||||||
Sbjct: 39 ttggcattctgtccacctcca 59
>40078_ath-MIR394b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcc 40
|||||||||||||||||||||
Sbjct: 13 tttggcattctgtccacctcc 33
>40077_ath-MIR394a:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcc 40
|||||||||||||||||||||
Sbjct: 13 tttggcattctgtccacctcc 33
>39868_aly-MIR394b:mirbase
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcc 40
|||||||||||||||||||||
Sbjct: 40 tttggcattctgtccacctcc 60
>39867_aly-MIR394a:mirbase
Length = 220
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttggcattctgtccacctcc 40
|||||||||||||||||||||
Sbjct: 67 tttggcattctgtccacctcc 87
>42790_zma-MIR394b:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42789_zma-MIR394a:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 38 ttggcattctgtccacctcc 57
>41239_csi-MIR394:mirbase
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 17 ttggcattctgtccacctcc 36
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttggcattctgtccacctcc 40
||||||||||||||||||||
Sbjct: 43 ttggcattctgtccacctcc 62
