miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41241_csi-MIR396a:mirbase
Length = 153
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 4 aggttctctttgtgattttccacagctttcttgaactgt 42
|||| ||||||||||| ||||||||||||||||||||||
Sbjct: 4 aggtcctctttgtgatcttccacagctttcttgaactgt 42
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 19 ttttccacagctttcttgaactgtgt 44
|||||||||||||||||||| |||||
Sbjct: 109 ttttccacagctttcttgaattgtgt 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 100 aacacagttcatgagagctgtggaaaattactgagaggat 139
|||||| |||| || |||||||||||| |||| |||||||
Sbjct: 83 aacacaattcaagaaagctgtggaaaactactaagaggat 122
>42814_zma-MIR396h:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 10 tctttgtgattttccacagctttcttgaactg 41
|||||||||| |||||||||||||||||||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactg 78
>42808_zma-MIR396b:mirbase
Length = 136
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 tctttgtgattttccacagctttcttgaactg 41
|||||||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactg 41
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 tctttgtgattttccacagctttcttgaactg 41
|||||||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactg 41
>42461_sof-MIR396:mirbase
Length = 134
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 tctttgtgattttccacagctttcttgaactg 41
|||||||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactg 41
>42026_osa-MIR396a:mirbase
Length = 154
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 ctttgtgattttccacagctttcttgaactg 41
||||||||| |||||||||||||||||||||
Sbjct: 1 ctttgtgatcttccacagctttcttgaactg 31
>40477_gma-MIR396e:mirbase
Length = 114
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgattttccacagctttcttgaactgtgt 44
||||| ||||||||||||||||||||||||
Sbjct: 1 gtgatcttccacagctttcttgaactgtgt 30
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 15 gtgattttccacagctttcttgaactgtg 43
|||||||||||||||| ||||||| ||||
Sbjct: 114 gtgattttccacagctatcttgaattgtg 86
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ctctttgtgattttccacagctttcttgaactg 41
|||| |||||| |||||||||||||||||||||
Sbjct: 21 ctctctgtgatcttccacagctttcttgaactg 53
>41662_vvi-MIR396c:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgtgattttccacagctttcttgaactgt 42
|||||| ||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactgt 32
>41242_csi-MIR396b:mirbase
Length = 134
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ctctttgtgattttccacagctttcttgaactg 41
|||||||| |||||||||||||||||||||||
Sbjct: 8 ctctttgtatttttccacagctttcttgaactg 40
>41440_ptc-MIR396f:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 gtgattttccacagctttcttgaactgt 42
|||||||||||| |||||||||||||||
Sbjct: 5 gtgattttccacggctttcttgaactgt 32
>42027_osa-MIR396b:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 ctttgtgattttccacagctttcttgaactg 41
||||||| | |||||||||||||||||||||
Sbjct: 1 ctttgtggtcttccacagctttcttgaactg 31
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 12 ttttccacagctttcttgaact 33
>41660_vvi-MIR396a:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 12 ttttccacagctttcttgaact 33
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>41243_csi-MIR396c:mirbase
Length = 178
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 11 ttttccacagctttcttgaact 32
>41212_ccl-MIR396:mirbase
Length = 277
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 141 ttttccacagctttcttgaact 162
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 4 ttttccacagctttcttgaact 25
>40476_gma-MIR396d:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>40475_gma-MIR396c:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>40474_gma-MIR396b:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>40473_gma-MIR396a:mirbase
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 tctctttgtgattttccacagctttcttgaactg 41
||||||||| | |||||||||||||||||||||
Sbjct: 8 tctctttgtattcttccacagctttcttgaactg 41
>40379_rco-MIR396:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 4 ttttccacagctttcttgaact 25
>40086_ath-MIR396b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>39878_aly-MIR396b:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 30 ttttccacagctttcttgaact 51
>39426_pta-MIR396:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacagctttcttgaact 40
||||||||||||||||||||||
Sbjct: 15 ttttccacagctttcttgaact 36
>42813_zma-MIR396g:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaactg 91
>42812_zma-MIR396f:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaact 21
>42811_zma-MIR396e:mirbase
Length = 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaact 21
>42807_zma-MIR396a:mirbase
Length = 137
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41
>42584_sbi-MIR396c:mirbase
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaact 40
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41
>42472_ssp-MIR396:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>42028_osa-MIR396c:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaact 30
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaact 40
|||||||||||||||||||||
Sbjct: 31 tttccacagctttcttgaact 51
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaactg 53
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactg 21
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41
>41058_ghr-MIR396b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaactg 26
>40646_lja-MIR396:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaactg 36
>40085_ath-MIR396a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>39877_aly-MIR396a:mirbase
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactg 41
|||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaactg 44
>41189_aqc-MIR396b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40296_bna-MIR396a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>39379_pab-MIR396a:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
