miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40380_rco-MIR397:mirbase
Length = 157
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatgaattc 46
|||||||||||||||||||||||||||||
Sbjct: 3 acatcattgagtgcagcgttgatgaattc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 73 gatgaattcgccagcgctgcactcaatcatgt 104
||||| ||| ||||||||||| ||||||||||
Sbjct: 122 gatgatttcaccagcgctgcattcaatcatgt 153
>41244_csi-MIR397:mirbase
Length = 156
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatgaat 44
|||||||||||||||||||||||||||
Sbjct: 15 acatcattgagtgcagcgttgatgaat 41
>41664_vvi-MIR397a:mirbase
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatgaa 43
||||||||||||||||||||||||||
Sbjct: 8 acatcattgagtgcagcgttgatgaa 33
>42037_osa-MIR397a:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatgaa 43
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>41798_bdi-MIR397b:mirbase
Length = 292
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatgaa 43
|||||||||||||||||||||||||
Sbjct: 30 catcattgagtgcagcgttgatgaa 54
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatgaa 43
|||||||||||||||||||||||||
Sbjct: 176 catcattgagtgcagcgttgatgaa 200
>41797_bdi-MIR397a:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatgaa 43
|||||||||||||||||||||||||
Sbjct: 16 catcattgagtgcagcgttgatgaa 40
>41442_ptc-MIR397a:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatgaa 43
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>40298_bna-MIR397b:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatg 41
||||||||||||||||||||||||
Sbjct: 3 acatcattgagtgcagcgttgatg 26
>40297_bna-MIR397a:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatg 41
||||||||||||||||||||||||
Sbjct: 3 acatcattgagtgcagcgttgatg 26
>40087_ath-MIR397a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatg 41
||||||||||||||||||||||||
Sbjct: 8 acatcattgagtgcagcgttgatg 31
>39880_aly-MIR397b:mirbase
Length = 131
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatg 41
||||||||||||||||||||||||
Sbjct: 16 acatcattgagtgcagcgttgatg 39
>39879_aly-MIR397a:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatg 41
||||||||||||||||||||||||
Sbjct: 17 acatcattgagtgcagcgttgatg 40
>39382_pab-MIR397:mirbase
Length = 134
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 cacatcattgagtgcagcgttga 39
|||||||||||||||||||||||
Sbjct: 13 cacatcattgagtgcagcgttga 35
>42587_sbi-MIR397:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tcattgagtgcagcgttgatga 42
||||||||||||||||||||||
Sbjct: 1 tcattgagtgcagcgttgatga 22
>41443_ptc-MIR397b:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 cattgagtgcagcgttgatgaa 43
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
>42038_osa-MIR397b:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 attgagtgcagcgttgatgaa 43
|||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatgaa 33
>41547_sly-MIR397:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatga 42
|||| ||||||||||||||||||||
Sbjct: 15 acatgattgagtgcagcgttgatga 39
>41891_hvu-MIR397:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttgagtgcagcgttgatgaa 43
||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaa 33
>40088_ath-MIR397b:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 acatcattgagtgcagcgttgatg 41
||||||||||||||| ||||||||
Sbjct: 8 acatcattgagtgcatcgttgatg 31
