miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41247_csi-MIR399b:mirbase
Length = 168
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 6 taagtgatctagttgtagggcttctctcctttggcaggt 44
|||| ||| ||||||||||||||||||||||||||||||
Sbjct: 8 taagcgatttagttgtagggcttctctcctttggcaggt 46
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
||||||||||||||||||| ||||||
Sbjct: 126 gccaaaggagagttgccctataactg 151
>40746_mtr-MIR399p:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 caataactcgccaaaggagagttgccctgt 117
|||||||| |||||||||||||||||||||
Sbjct: 46 caataacttgccaaaggagagttgccctgt 75
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 caataactcgccaaaggagagttgccctgt 117
|||||||| |||||||||||||||||||||
Sbjct: 46 caataacttgccaaaggagagttgccctgt 75
>42823_zma-MIR399e:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaac 120
||||||||||||||||||||||||
Sbjct: 86 gccaaaggagagttgccctgtaac 109
>42597_sbi-MIR399i:mirbase
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaac 120
||||||||||||||||||||||||
Sbjct: 83 gccaaaggagagttgccctgtaac 106
>41676_vvi-MIR399i:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tagttgtagggcttctctcctt 36
||||||||||||||||||||||
Sbjct: 3 tagttgtagggcttctctcctt 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 cgccaaaggagagttgccctgt 117
||||||||||||||||||||||
Sbjct: 92 cgccaaaggagagttgccctgt 113
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
||||||||||||||||||||| ||||
Sbjct: 88 gccaaaggagagttgccctgtgactg 113
>41459_ptc-MIR399l:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 cgccaaaggagagttgccctgtaact 121
|||||||||||||||||||| |||||
Sbjct: 81 cgccaaaggagagttgccctctaact 106
>41249_csi-MIR399d:mirbase
Length = 130
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
||||||||||||||||||||| ||||
Sbjct: 101 gccaaaggagagttgccctgtgactg 126
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactgattc 126
||||||||||||||||||||| || |||||
Sbjct: 118 gccaaaggagagttgccctgtgacagattc 147
>40094_ath-MIR399c:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
||||||||||||||||||||| ||||
Sbjct: 85 gccaaaggagagttgccctgtcactg 110
>40093_ath-MIR399b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
|||||||||||||||||||| |||||
Sbjct: 106 gccaaaggagagttgccctgaaactg 131
>39885_aly-MIR399b:mirbase
Length = 154
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgtaactg 122
|||||||||||||||||||| |||||
Sbjct: 107 gccaaaggagagttgccctgaaactg 132
>41670_vvi-MIR399c:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgt 117
|||||||||||||||||||||
Sbjct: 53 gccaaaggagagttgccctgt 73
>41027_pvu-MIR399a:mirbase
Length = 223
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgt 117
|||||||||||||||||||||
Sbjct: 90 gccaaaggagagttgccctgt 110
>40383_rco-MIR399a:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgt 117
|||||||||||||||||||||
Sbjct: 69 gccaaaggagagttgccctgt 89
>39886_aly-MIR399c:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctgt 117
|||||||||||||||||||||
Sbjct: 90 gccaaaggagagttgccctgt 110
>42828_zma-MIR399j:mirbase
Length = 175
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctg 116
||||||||||||||||||||
Sbjct: 155 gccaaaggagagttgccctg 174
>42827_zma-MIR399i:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctg 116
||||||||||||||||||||
Sbjct: 71 gccaaaggagagttgccctg 90
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctg 116
||||||||||||||||||||
Sbjct: 167 gccaaaggagagttgccctg 186
>42044_osa-MIR399d:mirbase
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 gccaaaggagagttgccctg 116
||||||||||||||||||||
Sbjct: 257 gccaaaggagagttgccctg 276
