miRNEST 2.0, an integrative microRNA resource :: BLAST
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 75 cattcatgtggtgtgccctctgccaaaggagatttgcccggcaattctt 123
||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cattcttgtagtgtgccctctgccaaaggagatttgcccggcaattctt 110
>41246_csi-MIR399a:mirbase
Length = 155
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 85 gtgtgccctctgccaaaggagatttgcccggcaattc 121
||||||| |||||||||||||||||||||||||||||
Sbjct: 104 gtgtgccttctgccaaaggagatttgcccggcaattc 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 17 attacagggcaagatttccattggcaggc 45
|||||||||||| || |||||||||||||
Sbjct: 28 attacagggcaacatctccattggcaggc 56
>41457_ptc-MIR399j:mirbase
Length = 112
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tgcattacagggcaagacctccattggcaggcagccact 39
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 85 gtgtgccctctgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 72 gtgtgccctctgccaaaggagatttgtccggcaaatctt 110
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||||||||
Sbjct: 94 tctgccaaaggagatttgcccggcaattctt 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaa-gatttccattggcaggcagccactt 53
||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 14 tgcattacagggcaaagatctccattggcaggctgccactt 54
>40097_ath-MIR399f:mirbase
Length = 118
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 81 tgtggtgtgccctctgccaaaggagatttgcccggcaattct 122
||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 74 tgtggtgagctctctgccaaaggagatttgcccggtaattct 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcag 43
|||||||||||||||||| ||||||||||
Sbjct: 4 tgcattacagggcaagatcaccattggcag 33
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattctt 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
|||||||||||||||| || ||||||||| |||||||||
Sbjct: 9 tgcattacagggcaagctt-ccattggcatgcagccact 46
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattctt 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
|||||||||||||||| || ||||||||| |||||||||
Sbjct: 9 tgcattacagggcaagctt-ccattggcatgcagccact 46
>40387_rco-MIR399e:mirbase
Length = 108
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 85 gtgtgccctctgccaaaggagatttgcccggcaatt 120
||||||| ||||||||||||||||||||| ||||||
Sbjct: 73 gtgtgccttctgccaaaggagatttgcccagcaatt 108
>39893_aly-MIR399j:mirbase
Length = 136
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattcttttg 126
||||||||||||||||||||| ||||||||||
Sbjct: 96 tgccaaaggagatttgcccggtaattcttttg 127
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcagg 44
|||||||||||||||||| || |||||||||
Sbjct: 12 tgcattacagggcaagatctctattggcagg 42
>39884_aly-MIR399a:mirbase
Length = 162
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||| |||||||
Sbjct: 110 ctctgccaaaggagatttgcccggtaattctt 141
>40384_rco-MIR399b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
||||||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccggcaat 105
>40095_ath-MIR399d:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||||| |||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaattc 96
>39889_aly-MIR399f:mirbase
Length = 167
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 81 tgtggtgtgccctctgccaaaggagatttgcccggcaattct 122
||||||| || |||||||||||||||||||||| | ||||||
Sbjct: 98 tgtggtgagctctctgccaaaggagatttgccctgtaattct 139
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 6 ggtgcaactgcattacagggcaagatttccattggcag 43
||||||| | |||||||||||||||| ||||||||||
Sbjct: 20 ggtgcaaatacattacagggcaagatcaccattggcag 57
>39887_aly-MIR399d:mirbase
Length = 135
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||||| |||||||
Sbjct: 81 ctctgccaaaggagatttgccccgcaattc 110
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||| |||||
Sbjct: 78 ctctgccaaaggagatttgcccagcaat 105
>42046_osa-MIR399f:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||| |||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaat 111
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 76 ctgccaaaggagatttgccccgcaattc 103
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 86 tgtgccctctgccaaaggagatttgcccggcaattc 121
||||| ||||||||| |||||||||||| |||||||
Sbjct: 92 tgtgctctctgccaatggagatttgcccagcaattc 127
Score = 40.1 bits (20), Expect = 4e-04
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccactt 53
||||||||||||||| || | || ||||||||||||||||
Sbjct: 14 tgcattacagggcaa-atcttcactggcaggcagccactt 52
>40299_bna-MIR399:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccgg 115
||||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcccgg 101
>39892_aly-MIR399i:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 91 ctgccaaaggagatttgccccgcaattc 118
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaatt 120
|||||||||||||||||||| ||||||
Sbjct: 78 ctgccaaaggagatttgcccagcaatt 104
>40092_ath-MIR399a:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattctt 123
||||||||||||||||||||| | |||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattctt 121
>39890_aly-MIR399g:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaatt 120
|||||||||||||||||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136
>42597_sbi-MIR399i:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 tgccctctgccaaaggagatttgccc 113
||||||||||||||||||| ||||||
Sbjct: 75 tgccctctgccaaaggagagttgccc 100
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>42045_osa-MIR399e:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattct 122
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattct 122
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattct 122
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattct 122
>40385_rco-MIR399c:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggc 116
||||||||||||||||||||||
Sbjct: 71 tgccaaaggagatttgcccggc 92
>40096_ath-MIR399e:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cctctgccaaaggagatttgcc 112
||||||||||||||||||||||
Sbjct: 75 cctctgccaaaggagatttgcc 96
>39888_aly-MIR399e:mirbase
Length = 191
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cctctgccaaaggagatttgcc 112
||||||||||||||||||||||
Sbjct: 114 cctctgccaaaggagatttgcc 135
>42050_osa-MIR399j:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 gccctctgccaaaggagatttgccc 113
|||||||||||||||||| ||||||
Sbjct: 70 gccctctgccaaaggagagttgccc 94
>42047_osa-MIR399g:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgccc 97
>39891_aly-MIR399h:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccgg 115
|||||||||||||||||||||
Sbjct: 82 tgccaaaggagatttgcccgg 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 17 attacagggcaagatttccattggcagg 44
||||||||||||||| || |||||||||
Sbjct: 1 attacagggcaagatctctattggcagg 28
>42823_zma-MIR399e:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 90 ccctctgccaaaggagatttgccc 113
||||||||||||||||| ||||||
Sbjct: 80 ccctctgccaaaggagagttgccc 103
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
