miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41246_csi-MIR399a:mirbase
Length = 155
Score = 69.9 bits (35), Expect = 5e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 85 agtgtgtcttctgccaaaggagatttgcccggcaattcttccgcatt 131
|||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 103 agtgtgccttctgccaaaggagatttgcccggcaattcctctgcatt 149
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 17 attacagggcaaagatctccattggcaggctgc 49
|||||||||||| |||||||||||||||||||
Sbjct: 28 attacagggcaac-atctccattggcaggctgc 59
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 84 tagtgtgtcttctgccaaaggagatttgcccggcaattcttc 125
||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 70 tagtgtgccctctgccaaaggagatttgcccggcaattcttc 111
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattctt 124
|||||||||||||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcccggcaattctt 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaaagatctccattggcaggctgccactt 54
||||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 14 tgcattacagggcaa-gatttccattggcaggcagccactt 53
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 96 tgccaaaggagatttgcccggcaattcttc 125
||||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ggtgcagttgcattacagggcaa 28
|||||||||||||||||||||||
Sbjct: 1 ggtgcagttgcattacagggcaa 23
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 96 tgccaaaggagatttgcccggcaattcttc 125
||||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 ggtgcagttgcattacagggcaa 28
|||||||||||||||||||||||
Sbjct: 1 ggtgcagttgcattacagggcaa 23
>40387_rco-MIR399e:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 85 agtgtgtcttctgccaaaggagatttgcccggcaatt 121
|||||| ||||||||||||||||||||||| ||||||
Sbjct: 72 agtgtgccttctgccaaaggagatttgcccagcaatt 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 18 ttacagggcaaagatctccattggcaggctgccacttt 55
|||||||||||| ||||||||||||||| ||||||||
Sbjct: 1 ttacagggcaaatatctccattggcaggtagccacttt 38
>39884_aly-MIR399a:mirbase
Length = 162
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattcttc 125
||||||||||||||||||||||| ||||||||
Sbjct: 111 tctgccaaaggagatttgcccggtaattcttc 142
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 54.0 bits (27), Expect = 3e-08
Identities = 45/50 (90%), Gaps = 2/50 (4%)
Strand = Plus / Plus
Query: 8 tgcagttgcattacagggcaaagatctccattggcaggctgccactttgg 57
||||||||||||||||||||| |||| || |||||||| ||||||||||
Sbjct: 8 tgcagttgcattacagggcaa--atcttcactggcaggcagccactttgg 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattc 122
|||||||| |||||||||||| |||||||
Sbjct: 99 tctgccaatggagatttgcccagcaattc 127
>40384_rco-MIR399b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaat 120
||||||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccggcaat 105
>40097_ath-MIR399f:mirbase
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattct 123
||||||||||||||||||||||| ||||||
Sbjct: 86 tctgccaaaggagatttgcccggtaattct 115
>41457_ptc-MIR399j:mirbase
Length = 112
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 85 agtgtgtcttctgccaaaggagatttgcccggcaattcttc 125
|||||| | |||||||||||||||||| ||||||| |||||
Sbjct: 71 agtgtgccctctgccaaaggagatttgtccggcaaatcttc 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaaagatctccattggcaggctgccact 53
||||||||||||||| || |||||||||||||| ||||||
Sbjct: 1 tgcattacagggcaa-gacctccattggcaggcagccact 39
>40095_ath-MIR399d:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattc 122
||||||||||||||||||||| |||||||
Sbjct: 68 tctgccaaaggagatttgccccgcaattc 96
>39893_aly-MIR399j:mirbase
Length = 136
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 96 tgccaaaggagatttgcccggcaattctt 124
||||||||||||||||||||| |||||||
Sbjct: 96 tgccaaaggagatttgcccggtaattctt 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaaagatctccattggcagg 45
||||||||||||| |||||||| |||||||||
Sbjct: 12 tgcattacagggc-aagatctctattggcagg 42
>39887_aly-MIR399d:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattc 122
||||||||||||||||||||| |||||||
Sbjct: 82 tctgccaaaggagatttgccccgcaattc 110
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaattc 122
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaattc 122
|||||||||||||||||||| |||||||
Sbjct: 76 ctgccaaaggagatttgccccgcaattc 103
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 84 tagtgtgtcttctgccaaaggagatttgcccggcaattct 123
|||||||| ||||||||||||||||||||| || |||||
Sbjct: 83 tagtgtgtaatctgccaaaggagatttgcccagcgattct 122
>40092_ath-MIR399a:mirbase
Length = 123
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattcttc 125
||||||||||||||||||||| | ||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattcttc 122
>39892_aly-MIR399i:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaattc 122
|||||||||||||||||||| |||||||
Sbjct: 91 ctgccaaaggagatttgccccgcaattc 118
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaat 120
||||||||||||||||||||| |||||
Sbjct: 79 tctgccaaaggagatttgcccagcaat 105
>42046_osa-MIR399f:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaat 120
||||||||||||||||||||| |||||
Sbjct: 85 tctgccaaaggagatttgcccagcaat 111
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaatt 121
|||||||||||||||||||| ||||||
Sbjct: 78 ctgccaaaggagatttgcccagcaatt 104
>40299_bna-MIR399:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccgg 116
|||||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgcccgg 101
>39890_aly-MIR399g:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaatt 121
|||||||||||||||||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaat 120
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>42045_osa-MIR399e:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgcccggcaat 120
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattct 123
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattct 122
>40385_rco-MIR399c:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgccaaaggagatttgcccggc 117
||||||||||||||||||||||
Sbjct: 71 tgccaaaggagatttgcccggc 92
>39889_aly-MIR399f:mirbase
Length = 167
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattct 123
||||||||||||||||||||| | ||||||
Sbjct: 110 tctgccaaaggagatttgccctgtaattct 139
>42047_osa-MIR399g:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgccc 114
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgccc 114
|||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgccc 97
>39891_aly-MIR399h:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 tgccaaaggagatttgcccgg 116
|||||||||||||||||||||
Sbjct: 82 tgccaaaggagatttgcccgg 102
>39888_aly-MIR399e:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcccggcaattcttcc 126
|||||||||||||||||||| ||||| |||||
Sbjct: 116 tctgccaaaggagatttgcctcgcaatgcttcc 148
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 95 ctgccaaaggagatttgccc 114
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>40096_ath-MIR399e:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 tctgccaaaggagatttgcc 113
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96
