miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41213_crt-MIR166a:mirbase
Length = 202
Score = 153 bits (77), Expect = 4e-38
Identities = 90/93 (96%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 35 ttcccttcagaatcaaattcattatttgatctttt-tgagaggttatggttgatgggaat 93
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ttcccttcagaatcaaattcattgtttgattttttttgagaggttatggttgatgggaat 60
Query: 94 gttgtttggctcgagggtcatctaggttttcaa 126
|||||||||||||||||||||||||||||||||
Sbjct: 61 gttgtttggctcgagggtcatctaggttttcaa 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccc 39
||||||||||||||||||||
Sbjct: 161 tcggaccaggcttcattccc 180
>41223_csi-MIR166b:mirbase
Length = 192
Score = 121 bits (61), Expect = 1e-28
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 66 tttttgagaggttatggttgatgggaatgttgtttggctcgagggtcatctaggttttca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttttgagaggttatggttgatgggaatgttgtttggctcgagggtcatctaggttttca 82
Query: 126 a 126
|
Sbjct: 83 a 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccc 39
||||||||||||||||||||
Sbjct: 151 tcggaccaggcttcattccc 170
>41214_crt-MIR166b:mirbase
Length = 202
Score = 105 bits (53), Expect = 8e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 1 ttataatgaaaaaagggtatcggaccaggcttcattcccttcagaatcaaattcatt 57
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttatcatgaaaaaagggtatcggaccaggcttcattcccttcagaatcaaattcatt 198
>41095_tcc-MIR166b:mirbase
Length = 178
Score = 65.9 bits (33), Expect = 7e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 81 ggttgatgggaatgttgtttggctcgagggtcatctaggtt 121
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12 ggttgatgggaatgttgtttggctcga-ggtcatctaggtt 51
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccc 39
||||||||||||||||||||
Sbjct: 139 tcggaccaggcttcattccc 158
>40669_mtr-MIR166b:mirbase
Length = 170
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 82 gttgatgggaatgttgtttggctcgagg 109
||||||||||||||||||||||||||||
Sbjct: 1 gttgatgggaatgttgtttggctcgagg 28
>41949_osa-MIR166m:mirbase
Length = 200
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccctt 41
||||||||||||||||||||||
Sbjct: 147 tcggaccaggcttcattccctt 168
>41937_osa-MIR166a:mirbase
Length = 145
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcaga 45
|||||||||||||||||||| |||||
Sbjct: 110 tcggaccaggcttcattcccctcaga 135
>41745_bdi-MIR166c:mirbase
Length = 172
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcaga 45
|||||||||||||||||||| |||||
Sbjct: 121 tcggaccaggcttcattcccctcaga 146
>41939_osa-MIR166c:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 gggtatcggaccaggcttcattccc 39
|||| ||||||||||||||||||||
Sbjct: 86 gggtttcggaccaggcttcattccc 110
>41885_hvu-MIR166b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 gggtatcggaccaggcttcattccc 39
|||| ||||||||||||||||||||
Sbjct: 77 gggtttcggaccaggcttcattccc 101
>41170_aqc-MIR166d:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 tatcggaccaggcttcattcc 38
|||||||||||||||||||||
Sbjct: 103 tatcggaccaggcttcattcc 123
>40038_ath-MIR166g:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 ggaatgttgtttggctcgagg 109
|||||||||||||||||||||
Sbjct: 18 ggaatgttgtttggctcgagg 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccc 39
||||||||||||||||||||
Sbjct: 85 tcggaccaggcttcattccc 104
>39827_aly-MIR166g:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 ggaatgttgtttggctcgagg 109
|||||||||||||||||||||
Sbjct: 22 ggaatgttgtttggctcgagg 42
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattccc 39
||||||||||||||||||||
Sbjct: 89 tcggaccaggcttcattccc 108
>39735_smo-MIR166c:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 107 tcggaccaggcttcattcccctcag 131
>39734_smo-MIR166b:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 99 tcggaccaggcttcattcccctcag 123
>39470_ppt-MIR166g:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 96 tcggaccaggcttcattcccctcag 120
>39469_ppt-MIR166f:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 74 tcggaccaggcttcattcccctcag 98
>39468_ppt-MIR166e:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 96 tcggaccaggcttcattcccctcag 120
>39465_ppt-MIR166b:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 74 tcggaccaggcttcattcccctcag 98
>39464_ppt-MIR166a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 tcggaccaggcttcattcccttcag 44
|||||||||||||||||||| ||||
Sbjct: 74 tcggaccaggcttcattcccctcag 98
