miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41258_csi-MIR479:mirbase
Length = 147
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 26 attggagaagtagacatggtgtgatattggttcggctcatcttaattaatagattcatat 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attggagaagtagacatggtgtgatattggttcggctcatcttaattaatagattcatat 60
Query: 86 ttcagcccttaaggttcttacatgtatatatctagacgagccgaatcaatatcactcttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcagcccttaaggttcttacatgtatatatctagacgagccgaatcaatatcactcttg 120
Query: 146 tatgcttctttcttttgatt 165
||||||||||||||||||||
Sbjct: 121 tatgcttctttcttttgatt 140
>41392_ptc-MIR171l:mirbase
Length = 112
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttctt 155
|||||||||||||||||||||||||||||||||||||
Sbjct: 75 agacgagccgaatcaatatcactcttgtatgcttctt 111
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 29 ggagaagtagacatggtgtgatattggttcggctcatctt 68
||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1 ggagaagtagacacggtgtgatattggtccggctcatctt 40
>41686_vvi-MIR479:mirbase
Length = 94
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttc 153
|||||||||||| ||||||||||||||||||||||
Sbjct: 60 agacgagccgaaccaatatcactcttgtatgcttc 94
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 35 gtagacatggtgtgatattggttcggctcatctt 68
|||||||||||||| |||||||||||||||||||
Sbjct: 1 gtagacatggtgtggtattggttcggctcatctt 34
>41394_ptc-MIR171n:mirbase
Length = 101
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttc 153
||||||||||||||||||||||||||||| |||||
Sbjct: 67 agacgagccgaatcaatatcactcttgtacgcttc 101
>41393_ptc-MIR171m:mirbase
Length = 101
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgcttc 153
||||||||||||||||||||||||||||| |||||
Sbjct: 67 agacgagccgaatcaatatcactcttgtacgcttc 101
>40456_gma-MIR171b:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgctt 152
|||||||||||||||||||||||||||| |||||
Sbjct: 59 agacgagccgaatcaatatcactcttgtttgctt 92
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 36 tagacatggtgtgatattggttcggctcatcttaatt 72
|||||| || ||||||||||| |||||||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatcttaatt 37
>40455_gma-MIR171b:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactcttgtatgctt 152
|||||||||||||||||||||||||||| |||||
Sbjct: 59 agacgagccgaatcaatatcactcttgtttgctt 92
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 36 tagacatggtgtgatattggttcggctcatcttaatt 72
|||||| || ||||||||||| |||||||||||||||
Sbjct: 1 tagacacggcgtgatattggtacggctcatcttaatt 37
>41064_ghr-MIR479:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 122 cgagccgaatcaatatcactcttgtatgctt 152
||||||||||||||||||||| |||||||||
Sbjct: 63 cgagccgaatcaatatcactcatgtatgctt 93
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 29 ggagaagtagacatggtgtgatattggttcggctcatctta 69
|||| |||||||| | ||||||||||||||||||||||||
Sbjct: 1 ggaggagtagacacgacgtgatattggttcggctcatctta 41
>41499_ptc-MIR479:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 119 agacgagccgaatcaatatcactct 143
|||||||||||||||||||||||||
Sbjct: 61 agacgagccgaatcaatatcactct 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 ggtgtgatattggttcggctcatctt 68
|||||||||||||| |||||||||||
Sbjct: 1 ggtgtgatattggtccggctcatctt 26
>42551_sbi-MIR171f:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 gtgatattggttcggctcatc 66
|||||||||||||||||||||
Sbjct: 99 gtgatattggttcggctcatc 79
>42771_zma-MIR171k:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 123 gagccgaatcaatatcactcttgtatgcttctttct 158
|||||||| ||||||||||| ||||| |||| ||||
Sbjct: 67 gagccgaaccaatatcactcatgtattcttcattct 102
>42550_sbi-MIR171e:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 123 gagccgaatcaatatcactcttgtatgcttctttct 158
|||||||| ||||||||||| ||||| |||| ||||
Sbjct: 87 gagccgaaccaatatcactcatgtattcttcattct 122
