miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39865_aly-MIR393a:mirbase
Length = 147
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 5 gcaactagaggataaatccaaagggatcgcattgatcctaa 45
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 2 gcaactagaggaaggatccaaagggatcgcattgatcctaa 42
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 86 atgctatccctctggattcctccttcggtagct 118
|||||||| || ||||||| |||||||||||||
Sbjct: 115 atgctatctctttggattcatccttcggtagct 147
>40706_mtr-MIR393:mirbase
Length = 135
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 3 ctgcaactagaggataaatccaaagggatcgcattgatccta 44
|||||||| ||||| |||||||||||||||||||||||||
Sbjct: 3 ctgcaacttgaggaggcatccaaagggatcgcattgatccta 44
>40076_ath-MIR393b:mirbase
Length = 160
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcctaa 45
||||||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcctaa 35
>40075_ath-MIR393a:mirbase
Length = 133
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcctaa 45
||||||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcctaa 35
>39866_aly-MIR393b:mirbase
Length = 169
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcctaa 45
||||||||||||||||||||||||||
Sbjct: 17 atccaaagggatcgcattgatcctaa 42
>40295_bna-MIR393:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcctaa 45
|||||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcctaa 25
>41997_osa-MIR393:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcct 43
||||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcct 33
>41774_bdi-MIR393a:mirbase
Length = 159
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcct 43
||||||||||||||||||||||||
Sbjct: 35 atccaaagggatcgcattgatcct 58
>41132_tcc-MIR393a:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcct 43
||||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatcct 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 86 atgctatccctctggattcctcctt 110
||||||||||| |||||||||||||
Sbjct: 83 atgctatccctttggattcctcctt 107
>42566_sbi-MIR393:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcc 42
|||||||||||||||||||||||
Sbjct: 19 atccaaagggatcgcattgatcc 41
>41642_vvi-MIR393b:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcc 42
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 86 atgctatccctctggattcctcctt 110
||||||||||| |||||||||||||
Sbjct: 56 atgctatccctttggattcctcctt 80
>41418_ptc-MIR393b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcc 42
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 atgctatccctctggattcctcct 109
||||||||||| ||||||||||||
Sbjct: 61 atgctatccctttggattcctcct 84
>41417_ptc-MIR393a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcc 42
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 atgctatccctctggattcctcct 109
||||||||||| ||||||||||||
Sbjct: 62 atgctatccctttggattcctcct 85
>40707_mtr-MIR393b:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcc 42
|||||||||||||||||||||||
Sbjct: 5 atccaaagggatcgcattgatcc 27
>40470_gma-MIR393:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 atccaaagggatcgcattgatcc 42
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>42787_zma-MIR393b:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcc 42
||||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatcc 23
>41641_vvi-MIR393a:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatcc 42
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>42788_zma-MIR393c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatc 22
>42786_zma-MIR393a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>42567_sbi-MIR393b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>41999_osa-MIR393b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>41998_osa-MIR393b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>41775_bdi-MIR393b:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatc 62
>41420_ptc-MIR393d:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41419_ptc-MIR393c:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41133_tcc-MIR393b:mirbase
Length = 158
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>41054_ghr-MIR393:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40373_rco-MIR393:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 tccaaagggatcgcattgatc 41
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
