miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 83.8 bits (42), Expect = 3e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 102 tcatggaggtgggcatactgccaactgagctctgttggcttctctt 147
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75 tcatggaggtgggcatactgccaactgggctctgttggcttctctt 120
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 cttcttacagagtttattggcattctgtccacctcc 36
||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttcttacagagtttattggcattctgtccacctcc 40
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 83.8 bits (42), Expect = 3e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 102 tcatggaggtgggcatactgccaactgagctctgttggcttctctt 147
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 102 tcatggaggtgggcatactgccaactgtgctctgttggcttctctt 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 cttcttacagagtttattggcattctgtccacctcc 36
||||||||||||||||||||||||||||||||||||
Sbjct: 27 cttcttacagagtttattggcattctgtccacctcc 62
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 2 ttcttacagagtttattggcattctgtccacctcc 36
|||||||||||||||||||||||||||||||||||
Sbjct: 23 ttcttacagagtttattggcattctgtccacctcc 57
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 atggaggtgggcatactgccaactgagctctgttgg 139
||||||||||||||||||||||| ||||||||||||
Sbjct: 88 atggaggtgggcatactgccaaccgagctctgttgg 123
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 2 ttcttacagagtttattggcattctgtccacctcc 36
|||||||||||||||||||||||||||||||||||
Sbjct: 23 ttcttacagagtttattggcattctgtccacctcc 57
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 atggaggtgggcatactgccaactgagctctgttgg 139
||||||||||||||||||||||| ||||||||||||
Sbjct: 88 atggaggtgggcatactgccaaccgagctctgttgg 123
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaactgagctctgttgg 139
|||||||||||||||||||||||||||||||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttgg 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 2 ttcttacagagtttattggcattctgtccacctcc 36
|||||||||||||| ||||||||||||||||||||
Sbjct: 23 ttcttacagagttttttggcattctgtccacctcc 57
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaactgagctctgttgg 139
|||||||||||||||||||||||||||||||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttgg 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 2 ttcttacagagtttattggcattctgtccacctcc 36
|||||||||||||| ||||||||||||||||||||
Sbjct: 23 ttcttacagagttttttggcattctgtccacctcc 57
>40471_gma-MIR394a:mirbase
Length = 157
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 104 atggaggtgggcatactgccaactgagctctgttggct 141
|||||||||||||||||| |||||||||||||||||||
Sbjct: 97 atggaggtgggcatactgtcaactgagctctgttggct 134
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 acagagtttattggcattctgtccacctcc 36
||||||||||||||||||||||||||||||
Sbjct: 29 acagagtttattggcattctgtccacctcc 58
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 acagagtttattggcattctgtccacctcc 36
||||||||||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcc 30
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaactgagctctgtt 137
|||||||||||||||||||||| |||||||||
Sbjct: 61 tggaggtgggcatactgccaaccaagctctgtt 93
>40472_gma-MIR394b:mirbase
Length = 104
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 7 acagagtttattggcattctgtccacctcc 36
||||||||||||||||||||||||||||||
Sbjct: 3 acagagtttattggcattctgtccacctcc 32
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaactgagctctgttg 138
||||||||||||||||| |||||||| |||||||
Sbjct: 71 tggaggtgggcatactgtcaactgagttctgttg 104
>41776_bdi-MIR394:mirbase
Length = 200
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaactgagctctgttggcttc 143
||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 125 tggaggtgggcatactgccaatggagctgtgtaggcttc 163
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72
>39868_aly-MIR394b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 tcttacagagtttattggcattctgtccacctcc 36
|||||||||| | ||||||||||||||||||||
Sbjct: 27 tcttacagagatctttggcattctgtccacctcc 60
>42790_zma-MIR394b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 83 tggaggtgggcatactgccaa 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42789_zma-MIR394a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 87 tggaggtgggcatactgccaa 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 53 tggaggtgggcatactgccaa 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42000_osa-MIR394:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>40402_ahy-MIR394:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctccg 37
|||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctccg 42
>40078_ath-MIR394b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 4 cttacagagtttattggcattctgtccacctcc 36
||||||||| | ||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcc 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 106 ggaggtgggcatactgccaa 125
||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaa 107
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>39867_aly-MIR394a:mirbase
Length = 220
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttggcattctgtccacctcc 36
||||||||||||||||||||
Sbjct: 68 ttggcattctgtccacctcc 87
