miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41143_tcc-MIR397:mirbase
Length = 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaat 41
||||||||||||||||||||||||||
Sbjct: 19 catcattgagtgcagcgttgatgaat 44
>40380_rco-MIR397:mirbase
Length = 157
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaat 41
||||||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatgaat 29
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 87 tttcaccagcgctgcactcgatcatgttttt 117
|||||||||||||||| || |||||||||||
Sbjct: 127 tttcaccagcgctgcattcaatcatgttttt 157
>42037_osa-MIR397a:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>41798_bdi-MIR397b:mirbase
Length = 292
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 30 catcattgagtgcagcgttgatgaa 54
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 176 catcattgagtgcagcgttgatgaa 200
>41797_bdi-MIR397a:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 16 catcattgagtgcagcgttgatgaa 40
>41664_vvi-MIR397a:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>41442_ptc-MIR397a:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatgaa 40
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 87 tttcaccagcgctgcactcgatcatgttttt 117
|||||||||||||||| || |||||||||||
Sbjct: 89 tttcaccagcgctgcattcaatcatgttttt 119
>40298_bna-MIR397b:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
>40297_bna-MIR397a:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 4 catcattgagtgcagcgttgatg 26
>40087_ath-MIR397a:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>39880_aly-MIR397b:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 17 catcattgagtgcagcgttgatg 39
>39879_aly-MIR397a:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttgatg 38
|||||||||||||||||||||||
Sbjct: 18 catcattgagtgcagcgttgatg 40
>42587_sbi-MIR397:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcattgagtgcagcgttgatga 39
||||||||||||||||||||||
Sbjct: 1 tcattgagtgcagcgttgatga 22
>41443_ptc-MIR397b:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cattgagtgcagcgttgatgaa 40
||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaa 33
>42038_osa-MIR397b:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatgaa 40
|||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatgaa 33
>39382_pab-MIR397:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 catcattgagtgcagcgttga 36
|||||||||||||||||||||
Sbjct: 15 catcattgagtgcagcgttga 35
>41891_hvu-MIR397:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttgagtgcagcgttgatgaa 40
||||||||||||||||||||
Sbjct: 14 ttgagtgcagcgttgatgaa 33
>41547_sly-MIR397:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
