miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 69.9 bits (35), Expect = 5e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 103 agtgtgccttctgccaaaggagatttgcccggcaattcctctgcatt 149
|||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct: 85 agtgtgtcttctgccaaaggagatttgcccggcaattcttccgcatt 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 28 attacagggcaac-atctccattggcaggctgc 59
|||||||||||| |||||||||||||||||||
Sbjct: 17 attacagggcaaagatctccattggcaggctgc 49
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 103 agtgtgccttctgccaaaggagatttgcccggcaattc 140
|||||||| |||||||||||||||||||||||||||||
Sbjct: 71 agtgtgccctctgccaaaggagatttgcccggcaattc 108
>40387_rco-MIR399e:mirbase
Length = 108
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 102 cagtgtgccttctgccaaaggagatttgcccggcaatt 139
||||||||||||||||||||||||||||||| ||||||
Sbjct: 71 cagtgtgccttctgccaaaggagatttgcccagcaatt 108
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 104 gtgtgccttctgccaaaggagatttgcccggcaattc 140
||||||| |||||||||||||||||||||||||||||
Sbjct: 85 gtgtgccctctgccaaaggagatttgcccggcaattc 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 28 attacagggcaacatctccattggcaggc 56
|||||||||||| || |||||||||||||
Sbjct: 17 attacagggcaagatttccattggcaggc 45
>39884_aly-MIR399a:mirbase
Length = 162
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaattcctctgca 147
||||||||||||||||||||||| ||||| ||||||
Sbjct: 111 tctgccaaaggagatttgcccggtaattcttctgca 146
>41457_ptc-MIR399j:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 103 agtgtgccttctgccaaaggagatttgcccggcaa 137
|||||||| |||||||||||||||||| |||||||
Sbjct: 71 agtgtgccctctgccaaaggagatttgtccggcaa 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 28 attacagggcaacatctccattggcaggc 56
|||||||||||| | ||||||||||||||
Sbjct: 4 attacagggcaagacctccattggcaggc 32
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 114 tgccaaaggagatttgcccggcaattc 140
|||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattc 123
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 114 tgccaaaggagatttgcccggcaattc 140
|||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattc 123
>40384_rco-MIR399b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaat 138
||||||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccggcaat 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 ttacagggcaacatctccattggca 53
||||||||||| |||||||||||||
Sbjct: 1 ttacagggcaaaatctccattggca 25
>40097_ath-MIR399f:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaattc 140
||||||||||||||||||||||| |||||
Sbjct: 86 tctgccaaaggagatttgcccggtaattc 114
>40095_ath-MIR399d:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaattc 140
||||||||||||||||||||| |||||||
Sbjct: 68 tctgccaaaggagatttgccccgcaattc 96
>39887_aly-MIR399d:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaattc 140
||||||||||||||||||||| |||||||
Sbjct: 82 tctgccaaaggagatttgccccgcaattc 110
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaattc 140
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaattc 140
|||||||||||||||||||| |||||||
Sbjct: 76 ctgccaaaggagatttgccccgcaattc 103
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaattcctctgca 147
|||||||| |||||||||||| |||||||| |||||
Sbjct: 99 tctgccaatggagatttgcccagcaattccactgca 134
>39892_aly-MIR399i:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaattc 140
|||||||||||||||||||| |||||||
Sbjct: 91 ctgccaaaggagatttgccccgcaattc 118
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaat 138
||||||||||||||||||||| |||||
Sbjct: 79 tctgccaaaggagatttgcccagcaat 105
>42046_osa-MIR399f:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccggcaat 138
||||||||||||||||||||| |||||
Sbjct: 85 tctgccaaaggagatttgcccagcaat 111
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaatt 139
|||||||||||||||||||| ||||||
Sbjct: 78 ctgccaaaggagatttgcccagcaatt 104
>40299_bna-MIR399:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcccgg 134
|||||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgcccgg 101
>39893_aly-MIR399j:mirbase
Length = 136
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 tgccaaaggagatttgcccggcaattc 140
||||||||||||||||||||| |||||
Sbjct: 96 tgccaaaggagatttgcccggtaattc 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 28 attacagggcaacatctccattggcagg 55
|||||||||||| ||||| |||||||||
Sbjct: 15 attacagggcaagatctctattggcagg 42
>39890_aly-MIR399g:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaatt 139
|||||||||||||||||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaat 138
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>42045_osa-MIR399e:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgcccggcaat 138
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 agtgtgccttctgccaaaggagatttgccc 132
||||||| |||||||||||||||||||||
Sbjct: 68 agtgtgcaatctgccaaaggagatttgccc 97
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 agtgtgccttctgccaaaggagatttgccc 132
||||||| |||||||||||||||||||||
Sbjct: 84 agtgtgcaatctgccaaaggagatttgccc 113
>40385_rco-MIR399c:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 tgccaaaggagatttgcccggc 135
||||||||||||||||||||||
Sbjct: 71 tgccaaaggagatttgcccggc 92
>42047_osa-MIR399g:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgccc 132
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgccc 132
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>40092_ath-MIR399a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgccc 132
|||||||||||||||||||||
Sbjct: 91 tctgccaaaggagatttgccc 111
>39891_aly-MIR399h:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgccaaaggagatttgcccgg 134
|||||||||||||||||||||
Sbjct: 82 tgccaaaggagatttgcccgg 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 28 attacagggcaacatctccattggcagg 55
|||||||||||| ||||| |||||||||
Sbjct: 1 attacagggcaagatctctattggcagg 28
>39889_aly-MIR399f:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgccc 132
|||||||||||||||||||||
Sbjct: 110 tctgccaaaggagatttgccc 130
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 ctgccaaaggagatttgccc 132
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>40096_ath-MIR399e:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcc 131
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96
>39888_aly-MIR399e:mirbase
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112 tctgccaaaggagatttgcc 131
||||||||||||||||||||
Sbjct: 116 tctgccaaaggagatttgcc 135
