miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41146_tcc-MIR399a:mirbase
Length = 136
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 8 taagcgatttagttgtagggcttctctcctttggcaggt 46
|||| ||| ||||||||||||||||||||||||||||||
Sbjct: 6 taagtgatctagttgtagggcttctctcctttggcaggt 44
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 126 gccaaaggagagttgccctataactg 151
||||||||||||||||||| ||||||
Sbjct: 97 gccaaaggagagttgccctgtaactg 122
>39885_aly-MIR399b:mirbase
Length = 154
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 119 atgacctgccaaaggagagttgccctataactgcttcagctt 160
|||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 100 atgacctgccaaaggagagttgccctgaaactggttcagctt 141
>40093_ath-MIR399b:mirbase
Length = 135
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 118 aatgacctgccaaaggagagttgccct 144
|||||||||||||||||||||||||||
Sbjct: 98 aatgacctgccaaaggagagttgccct 124
>41676_vvi-MIR399i:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 5e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 17 tagttgtagggcttctctcctt-tggcaggtgatggc 52
|||||||||||||||||||||| ||||||| ||||||
Sbjct: 3 tagttgtagggcttctctccttctggcaggagatggc 39
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 117 caatgacctgccaaaggagagttgccct 144
|||||||| |||||||||||||||||||
Sbjct: 84 caatgacccgccaaaggagagttgccct 111
>42050_osa-MIR399j:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 124 ctgccaaaggagagttgccctataactg 151
|||||||||||||||||||||| |||||
Sbjct: 75 ctgccaaaggagagttgccctaaaactg 102
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 120 tgacctgccaaaggagagttgccctataactgcttc 155
|||| |||||||||||||||||||| | ||||||||
Sbjct: 82 tgacttgccaaaggagagttgccctgtgactgcttc 117
>41670_vvi-MIR399c:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 aatgacctgccaaaggagagttgccct 144
||||| |||||||||||||||||||||
Sbjct: 45 aatgatctgccaaaggagagttgccct 71
>41456_ptc-MIR399i:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccctataactg 151
|||||||||||||||||||||| ||||
Sbjct: 79 tgccaaaggagagttgccctatgactg 105
>41249_csi-MIR399d:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccctataactgcttc 155
|||||||||||||||||||| | ||||||||
Sbjct: 100 tgccaaaggagagttgccctgtgactgcttc 130
>41192_aqc-MIR399:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 124 ctgccaaaggagagttgccctat 146
|||||||||||||||||||||||
Sbjct: 71 ctgccaaaggagagttgccctat 93
>40094_ath-MIR399c:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccctataactgcttc 155
|||||||||||||||||||| | ||||||||
Sbjct: 84 tgccaaaggagagttgccctgtcactgcttc 114
>42828_zma-MIR399j:mirbase
Length = 175
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cctgccaaaggagagttgccct 144
||||||||||||||||||||||
Sbjct: 152 cctgccaaaggagagttgccct 173
>42823_zma-MIR399e:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 ctgccaaaggagagttgccctataac 149
||||||||||||||||||||| ||||
Sbjct: 84 ctgccaaaggagagttgccctgtaac 109
>42597_sbi-MIR399i:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 124 ctgccaaaggagagttgccctataac 149
||||||||||||||||||||| ||||
Sbjct: 81 ctgccaaaggagagttgccctgtaac 106
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cctgccaaaggagagttgccct 144
||||||||||||||||||||||
Sbjct: 164 cctgccaaaggagagttgccct 185
>42044_osa-MIR399d:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 cctgccaaaggagagttgccct 144
||||||||||||||||||||||
Sbjct: 254 cctgccaaaggagagttgccct 275
>41459_ptc-MIR399l:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 ggcttctctcctttggcaggtgatgg 51
||||||||| ||||||||||||||||
Sbjct: 13 ggcttctcttctttggcaggtgatgg 38
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 126 gccaaaggagagttgccctataact 150
||||||||||||||||||| |||||
Sbjct: 82 gccaaaggagagttgccctctaact 106
>41548_sly-MIR399:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgcccta 145
|||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgcccta 71
>42827_zma-MIR399i:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 70 tgccaaaggagagttgccct 89
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 117 tgccaaaggagagttgccct 136
>41027_pvu-MIR399a:mirbase
Length = 223
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccct 108
>40746_mtr-MIR399p:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccct 73
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccct 73
>40383_rco-MIR399a:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 68 tgccaaaggagagttgccct 87
>39886_aly-MIR399c:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125 tgccaaaggagagttgccct 144
||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccct 108
