miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41250_csi-MIR399e:mirbase
Length = 154
Score = 115 bits (58), Expect = 1e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 92 atttgcatccttctgtttgccaaaggagaattgccctgccattcactctcgcagctag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttgcatccttctgtttgccaaaggagaattgccctgccattcactctcgcagctag 58
>42819_zma-MIR399a:mirbase
Length = 123
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 108 ttgccaaaggagaattgccctgccattcac 137
||||||||||||||||||||||||||||||
Sbjct: 83 ttgccaaaggagaattgccctgccattcac 112
>41675_vvi-MIR399h:mirbase
Length = 90
Score = 60.0 bits (30), Expect = 5e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 95 tgcatccttctgttt-gccaaaggagaattgccctgccattc 135
||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 45 tgcatacttctgttttgccaaaggagaattgccctgccattc 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 aggaataacagtgcagtcctcctttggc 53
||||||||||||||| ||||||||||||
Sbjct: 1 aggaataacagtgcaatcctcctttggc 28
>41152_tcc-MIR399g:mirbase
Length = 112
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 107 tttgccaaaggagaattgccctgccattca 136
||||||||||||||||||||||||||||||
Sbjct: 70 tttgccaaaggagaattgccctgccattca 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 22 gttgaggaataacagtgcagtcctcctttggc 53
||||| |||||||||||||||||| |||||||
Sbjct: 7 gttgacgaataacagtgcagtccttctttggc 38
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 108 ttgccaaaggagaattgccctgccattca 136
|||||||||||||||||||||||||||||
Sbjct: 109 ttgccaaaggagaattgccctgccattca 137
>41453_ptc-MIR399f:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 107 tttgccaaaggagaattgccctgccattc 135
|||||||||||||||||||||||||||||
Sbjct: 70 tttgccaaaggagaattgccctgccattc 98
>41063_ghr-MIR399d:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 107 tttgccaaaggagaattgccctgccattcactc 139
|||||||||||||| ||||||||||||||||||
Sbjct: 65 tttgccaaaggagatttgccctgccattcactc 97
>42042_osa-MIR399b:mirbase
Length = 97
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattca 136
||||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
>41454_ptc-MIR399g:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattca 136
||||||||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattc 135
|||||||||||||||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccattc 119
>41150_tcc-MIR399e:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 110 gccaaaggagaattgccctgccattca 136
|||||||||||||||||||||||||||
Sbjct: 78 gccaaaggagaattgccctgccattca 104
>42043_osa-MIR399c:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattcac 137
|||||||||||||||||||||| ||||||
Sbjct: 80 tgccaaaggagaattgccctgcgattcac 108
>41151_tcc-MIR399f:mirbase
Length = 111
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 107 tttgccaaaggagaattgccctgccattcactc 139
||||||| |||||| ||||||||||||||||||
Sbjct: 69 tttgccagaggagatttgccctgccattcactc 101
>40739_mtr-MIR399i:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 gtttgccaaaggagaattgccctgccatt 134
||||||||||||||| |||||||||||||
Sbjct: 62 gtttgccaaaggagatttgccctgccatt 90
>40738_mtr-MIR399h:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 gtttgccaaaggagaattgccctgccatt 134
||||||||||||||| |||||||||||||
Sbjct: 62 gtttgccaaaggagatttgccctgccatt 90
>40733_mtr-MIR399c:mirbase
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 gtttgccaaaggagaattgccctgccatt 134
||||||||||||||| |||||||||||||
Sbjct: 77 gtttgccaaaggagatttgccctgccatt 105
>42598_sbi-MIR399j:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 ttgccaaaggagaattgccctgcc 131
||||||||||||||||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93
>42826_zma-MIR399h:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 108 ttgccaaaggagaattgccctgc 130
|||||||||||||||||||||||
Sbjct: 72 ttgccaaaggagaattgccctgc 94
>42821_zma-MIR399c:mirbase
Length = 207
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattc 135
|||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194
>42591_sbi-MIR399c:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattc 135
|||||||||||||||||||||| ||||
Sbjct: 91 tgccaaaggagaattgccctgcgattc 117
>42589_sbi-MIR399a:mirbase
Length = 136
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattc 135
|||||||||||||||||||||| ||||
Sbjct: 97 tgccaaaggagaattgccctgcgattc 123
>42041_osa-MIR399a:mirbase
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgc 130
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>41668_vvi-MIR399a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctg 129
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>40741_mtr-MIR399k:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 106 gtttgccaaaggagaattgccctgccatt 134
||||||||||| ||| |||||||||||||
Sbjct: 66 gtttgccaaagaagatttgccctgccatt 94
>42590_sbi-MIR399b:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattca 136
|||||||||||| ||||||||||||||
Sbjct: 82 tgccaaaggagagctgccctgccattca 109
>42049_osa-MIR399i:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgccattca 136
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattca 113
>41802_bdi-MIR399:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 109 tgccaaaggagaattgccctgcca 132
||||||||||||||| ||||||||
Sbjct: 73 tgccaaaggagaattaccctgcca 96
