miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41256_csi-MIR477b:mirbase
          Length = 138

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 14 gtcgttcactctccctcaagggcttc 39
          ||||||||||||||||||||||||||
Sbjct: 12 gtcgttcactctccctcaagggcttc 37

>41200_aqc-MIR477g:mirbase
          Length = 76

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 19 tcactctccctcaagggcttc 39
          |||||||||||||||||||||
Sbjct: 74 tcactctccctcaagggcttc 54

>41198_aqc-MIR477e:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 19 tcactctccctcaagggcttc 39
          |||||||||||||||||||||
Sbjct: 5  tcactctccctcaagggcttc 25

>41196_aqc-MIR477c:mirbase
          Length = 76

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 19 tcactctccctcaagggcttc 39
          |||||||||||||||||||||
Sbjct: 74 tcactctccctcaagggcttc 54