miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41254_csi-MIR473:mirbase
          Length = 159

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 12 gtcgttcactctccctcaagggcttc 37
          ||||||||||||||||||||||||||
Sbjct: 14 gtcgttcactctccctcaagggcttc 39

>41200_aqc-MIR477g:mirbase
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 17 tcactctccctcaagggcttct 38
          ||||||||||||||||||||||
Sbjct: 74 tcactctccctcaagggcttct 53

>41198_aqc-MIR477e:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 tcactctccctcaagggcttct 38
          ||||||||||||||||||||||
Sbjct: 5  tcactctccctcaagggcttct 26

>41196_aqc-MIR477c:mirbase
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 17 tcactctccctcaagggcttct 38
          ||||||||||||||||||||||
Sbjct: 74 tcactctccctcaagggcttct 53

>41195_aqc-MIR477b:mirbase
          Length = 72

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 19 actctccctcaagggcttct 38
          ||||||||||||||||||||
Sbjct: 1  actctccctcaagggcttct 20