miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41301_ptc-MIR159c:mirbase
          Length = 183

 Score =  107 bits (54), Expect = 3e-24
 Identities = 151/182 (82%), Gaps = 4/182 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
           ||||| |||||||||||||||||||||||||||| | || ||||||||||||  ||||||
Sbjct: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60

                                                                       
Query: 61  tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
           | ||||||| |||| |||| ||||||   ||||  |     ||| ||  |||||||||||
Sbjct: 61  taagctatggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgca 116

                                                                       
Query: 121 tatctcaggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaa 180
           |||||||||||||||||| ||||||||||||||       ||||||||||||||||||||
Sbjct: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176

             
Query: 181 cc 182
           ||
Sbjct: 177 cc 178




>41299_ptc-MIR159a:mirbase
          Length = 183

 Score =  107 bits (54), Expect = 3e-24
 Identities = 151/182 (82%), Gaps = 4/182 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
           ||||| |||||||||||||||||||||||||||| | || ||||||||||||  ||||||
Sbjct: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60

                                                                       
Query: 61  tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120
           | ||||||| |||| |||| ||||||   ||||  |     ||| ||  |||||||||||
Sbjct: 61  taagctatggatcc-acagtcctatct--atcaa-ctgaaggataggtttgcggcttgca 116

                                                                       
Query: 121 tatctcaggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaa 180
           |||||||||||||||||| ||||||||||||||       ||||||||||||||||||||
Sbjct: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176

             
Query: 181 cc 182
           ||
Sbjct: 177 cc 178




>40338_rco-MIR159:mirbase
          Length = 180

 Score =  107 bits (54), Expect = 3e-24
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                      
Query: 8  gagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagcta 67
          ||||||||||||||||||||||||||| | || || ||||||||| ||||||||||||||
Sbjct: 1  gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60

                            
Query: 68 tgaatcccacagccctat 85
          || |||||||||||||||
Sbjct: 61 tggatcccacagccctat 78




>41572_vvi-MIR159c:mirbase
          Length = 190

 Score = 97.6 bits (49), Expect = 3e-21
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                      
Query: 6  tggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagc 65
          ||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||  
Sbjct: 4  tggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgact 63

                               
Query: 66 tatgaatcccacagccctatc 86
          |||| ||||||||||||||||
Sbjct: 64 tatggatcccacagccctatc 84




>40397_ahy-MIR159:mirbase
          Length = 197

 Score = 77.8 bits (39), Expect = 3e-15
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                      
Query: 9  agtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctat 68
          |||||||||||||||||||||| ||| | || || ||||||||| |||||||| ||||||
Sbjct: 1  agtggagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctat 60

                     
Query: 69 gaatcccacag 79
          | |||||||||
Sbjct: 61 ggatcccacag 71




>40432_gma-MIR159a:mirbase
          Length = 214

 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
          ||||||| ||||||||||||||||||||||| || | || | ||||||  || |||||||
Sbjct: 11 gattatgaagtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgc 70

                             
Query: 61 tgagctatgaatcccacag 79
          | ||||||| |||||||||
Sbjct: 71 ttagctatggatcccacag 89




>41024_pvu-MIR159a:mirbase
          Length = 174

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatg 69
          |||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

                    
Query: 70 aatcccacag 79
           |||||||||
Sbjct: 61 gatcccacag 70




>41023_pvu-MIR159a:mirbase
          Length = 174

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatg 69
          |||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

                    
Query: 70 aatcccacag 79
           |||||||||
Sbjct: 61 gatcccacag 70




>41218_csi-MIR159:mirbase
          Length = 216

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 69/80 (86%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ggagtggagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagc 65
          |||||||||||||||||||||||| ||| | ||  ||  ||||| || ||||||||||||
Sbjct: 8  ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67

                              
Query: 66 tatgaatcccacagccctat 85
          |||| ||||||||| |||||
Sbjct: 68 tatggatcccacagtcctat 87




>39804_aly-MIR159a:mirbase
          Length = 222

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 113 ggcttgcatatctcaggagcttta 136
           ||||||||||||||||||||||||
Sbjct: 131 ggcttgcatatctcaggagcttta 154




>40016_ath-MIR159a:mirbase
          Length = 184

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 ttgcatatctcaggagcttta 136
           |||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134




>41528_sly-MIR159:mirbase
          Length = 177

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagctccttgaagtccaa 30
          ||||||||||||||||||||
Sbjct: 1  tggagctccttgaagtccaa 20




>40311_bra-MIR159a:mirbase
          Length = 185

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 113 ggcttgcatatctcaggagcttta 136
           ||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134




>40261_bna-MIR159:mirbase
          Length = 183

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 113 ggcttgcatatctcaggagcttta 136
           ||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132