miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41348_ptc-MIR168b:mirbase
          Length = 136

 Score =  113 bits (57), Expect = 4e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 125 gaattggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 123 gcgaattggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||||||
Sbjct: 132 gcgaattggatcccgccttgcatcaactgaatcggag 168



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 123 gcgaattggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcgaattggatcccgccttgcatcaactgaatcggag 167



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 10 ggtctctaattcgcttggtgcaggtcgggaactgatt 46




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 124 cgaattggatcccgccttgcatcaactgaatcggagg 160
           |||||||||||||||||||||||||||||||||||||
Sbjct: 78  cgaattggatcccgccttgcatcaactgaatcggagg 114



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctgattcgcttggtgcaggtcgggaac 32
          ||||||| ||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 124 cgaattggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||||||||||||||||||||||||
Sbjct: 117 cgaattggatcccgccttgcatcaactgaatcggag 152



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 9  ggtctcggattcgcttggtgcaggtcgggaactgatt 45




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 33 ggtctcggattcgcttggtgcaggtcgggaactgatt 69



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 131 gatcccgccttgcatcaactgaatcggag 159
           ||||||| |||| ||||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggag 138




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 125 gaattggatcccgccttgcatcaactgaatcg 156
           ||||||||||||||||||||||||||||||||
Sbjct: 97  gaattggatcccgccttgcatcaactgaatcg 128



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 9  attcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||
Sbjct: 4  attcgcttggtgcaggtcgggaactgatt 32




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  gattcgcttggtgcaggtcgggaactgattcggc 41
          |||||||||||||||||||||||||  |||||||
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
           ||||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcgga 133



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  gattcgcttggtgcaggtcgggaactgattcggc 41
          |||||||||||||||||||||||||  |||||||
Sbjct: 21 gattcgcttggtgcaggtcgggaaccaattcggc 54




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 4  ctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| |||||||||||||||||||||||||||
Sbjct: 11 ctctgactcgcttggtgcaggtcgggaactgatt 44




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 131 gatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggag 127



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctgattcgcttggtgcaggtcgggaac 32
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>42741_zma-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>42470_ssp-MIR168a:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 60  ggatcccgccttgcaccaagtgaatcggag 89




>42460_sof-MIR168b:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>42459_sof-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>41962_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41961_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41888_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41887_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41753_bdi-MIR168:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 75  ggatcccgccttgcaccaagtgaatcggag 104