miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41347_ptc-MIR168a:mirbase
          Length = 160

 Score =  113 bits (57), Expect = 3e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61



 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 101 gaattggatcccgccttgcatcaactgaatcggag 135
           |||||||||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactgaatcggag 159




>41215_crt-MIR168:mirbase
          Length = 201

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctaattcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47



 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
           ||||||||||||||||||||||||||||||||||||
Sbjct: 134 gaattggatcccgccttgcatcaactgaatcggaga 169




>41210_ccl-MIR168:mirbase
          Length = 176

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctaattcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggtctctaattcgcttggtgcaggtcgggaactgatt 46



 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
           ||||||||||||||||||||||||||||||||||||
Sbjct: 133 gaattggatcccgccttgcatcaactgaatcggaga 168




>41101_tcc-MIR168:mirbase
          Length = 167

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctaattcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtctctaattcgcttggtgcaggtcgggaactgatt 47



 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
           ||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaattggatcccgccttgcatcaactgaatcggaga 153




>40448_gma-MIR168:mirbase
          Length = 125

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 101 gaattggatcccgccttgcatcaactgaatcggag 135
           |||||||||||||||||||||||||||||||||||
Sbjct: 79  gaattggatcccgccttgcatcaactgaatcggag 113



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctaattcgcttggtgcaggtcgggaac 32
          ||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40




>40355_rco-MIR168:mirbase
          Length = 131

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 95  gaaagagaattggatcccgccttgcatcaactgaatcg 132
           ||||| ||||||||||||||||||||||||||||||||
Sbjct: 91  gaaagtgaattggatcccgccttgcatcaactgaatcg 128



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 6  ctaattcgcttggtgcaggtcgggaactgatt 37
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ctaattcgcttggtgcaggtcgggaactgatt 32




>41596_vvi-MIR168:mirbase
          Length = 132

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctaattcgcttggtgcaggtcgggaac 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 107 gatcccgccttgcatcaactgaatcggaga 136
           ||||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggaga 128




>40043_ath-MIR168a:mirbase
          Length = 138

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 9  attcgcttggtgcaggtcgggaactgattcggc 41
          ||||||||||||||||||||||||  |||||||
Sbjct: 16 attcgcttggtgcaggtcgggaaccaattcggc 48




>39832_aly-MIR168a:mirbase
          Length = 155

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 103 attggatcccgccttgcatcaactgaatcgga 134
           ||||||||||||||||||||||||||||||||
Sbjct: 102 attggatcccgccttgcatcaactgaatcgga 133



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 9  attcgcttggtgcaggtcgggaactgattcggc 41
          ||||||||||||||||||||||||  |||||||
Sbjct: 22 attcgcttggtgcaggtcgggaaccaattcggc 54




>40044_ath-MIR168b:mirbase
          Length = 124

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 9  attcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45




>39833_aly-MIR168b:mirbase
          Length = 176

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 9  attcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||||
Sbjct: 41 attcgcttggtgcaggtcgggaactgatt 69



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 107 gatcccgccttgcatcaactgaatcggag 135
           ||||||| |||| ||||||||||||||||
Sbjct: 110 gatcccgtcttgtatcaactgaatcggag 138




>40271_bna-MIR168:mirbase
          Length = 133

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 tcgcttggtgcaggtcgggaactgatt 37
          |||||||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt 44




>42742_zma-MIR168b:mirbase
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>42741_zma-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>42470_ssp-MIR168a:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 60  ggatcccgccttgcaccaagtgaatcggag 89




>42460_sof-MIR168b:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>42459_sof-MIR168a:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>41962_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41961_osa-MIR168a:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>41888_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41887_hvu-MIR168:mirbase
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 66  ggatcccgccttgcaccaagtgaatcggag 95




>41753_bdi-MIR168:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 106 ggatcccgccttgcatcaactgaatcggag 135
           ||||||||||||||| ||| ||||||||||
Sbjct: 75  ggatcccgccttgcaccaagtgaatcggag 104