miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41219_csi-MIR160:mirbase
Length = 143
Score = 276 bits (139), Expect = 4e-75
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1 tatacctatgtctatatatttataattatgtgcctggctccctgtatgccatttgcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tatacctatgtctatatatttataattatgtgcctggctccctgtatgccatttgcagag 62
Query: 61 tcaatcgaaacatcgatggcctccgtggatggcgtatgaggagccatgcatattccatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tcaatcgaaacatcgatggcctccgtggatggcgtatgaggagccatgcatattccatgt 122
Query: 121 ataatatatacccatagat 139
|||||||||||||||||||
Sbjct: 123 ataatatatacccatagat 141
>41306_ptc-MIR160b:mirbase
Length = 98
Score = 129 bits (65), Expect = 6e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 27 tatgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgt 86
|||||||||||||||||||||||||||||||||| | | || | | ||||||||||||||
Sbjct: 7 tatgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgt 66
Query: 87 ggatggcgtatgaggagccatgcatattc 115
|||||||||||||||||||||||||||||
Sbjct: 67 ggatggcgtatgaggagccatgcatattc 95
>41307_ptc-MIR160c:mirbase
Length = 98
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 27 tatgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgt 86
|||||||||||||||||||||||||||||||||| | | || | ||||||||||||||
Sbjct: 7 tatgtgcctggctccctgtatgccatttgcagagcccaccggttcttcgatggcctccgt 66
Query: 87 ggatggcgtatgaggagccatgcatattc 115
|||||||||||||||||||||||||||||
Sbjct: 67 ggatggcgtatgaggagccatgcatattc 95
>41577_vvi-MIR160e:mirbase
Length = 102
Score = 117 bits (59), Expect = 2e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtggat 90
|||||||||||||||||||||||||||||| | | || ||||||||||||| |||||||
Sbjct: 11 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 70
Query: 91 ggcgtatgaggagccatgcatat 113
|||||||||||||||||||||||
Sbjct: 71 ggcgtatgaggagccatgcatat 93
>40436_gma-MIR160:mirbase
Length = 119
Score = 95.6 bits (48), Expect = 8e-21
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 27 tatgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgt 86
||||||||||||||||||||||||||||| |||| |||||| |||| ||| ||| ||
Sbjct: 17 tatgtgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgt 76
Query: 87 ggatggcgtatgaggagccatgcatatt 114
|||||||||||||||||||| |||||||
Sbjct: 77 ggatggcgtatgaggagccaagcatatt 104
>40019_ath-MIR160a:mirbase
Length = 85
Score = 93.7 bits (47), Expect = 3e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtggat 90
|||||||||||||||||||||| ||| ||| | ||||| ||||||| |||||||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagt-atcgatgacctccgtggat 62
Query: 91 ggcgtatgaggagccatgcatat 113
|||||||||||||||||||||||
Sbjct: 63 ggcgtatgaggagccatgcatat 85
>39807_aly-MIR160a:mirbase
Length = 158
Score = 85.7 bits (43), Expect = 8e-18
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtggat 90
|||||||||||||||||||||| ||| ||| ||||| ||||||| |||||||||||
Sbjct: 42 tgcctggctccctgtatgccatatgctgagctcatcgagt-atcgatgacctccgtggat 100
Query: 91 ggcgtatgaggagccatgcatat 113
|||||||||||||||||||||||
Sbjct: 101 ggcgtatgaggagccatgcatat 123
>40312_bra-MIR160a:mirbase
Length = 127
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 75 gatggcctccgtggatggcgtatgaggagccatgcatatt 114
|||| |||||||| ||||||||||||||||||||||||||
Sbjct: 69 gatgacctccgtgaatggcgtatgaggagccatgcatatt 108
>40662_mtr-MIR160e:mirbase
Length = 91
Score = 60.0 bits (30), Expect = 5e-10
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 27 tatgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgt 86
|||||||||||||||||||||||||| | || || |||| ||| ||| ||| ||
Sbjct: 2 tatgtgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttgt 61
Query: 87 ggatggcgtatgaggagccatgcatattcc 116
|||||||||||||||||||| |||||||||
Sbjct: 62 ggatggcgtatgaggagccaagcatattcc 91
>40661_mtr-MIR160d:mirbase
Length = 91
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttgcagagtc 62
||||||||||||||||||||||||||| ||||||
Sbjct: 4 tgtgcctggctccctgtatgccatttgtagagtc 37
>40659_mtr-MIR160b:mirbase
Length = 91
Score = 60.0 bits (30), Expect = 5e-10
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 27 tatgtgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgt 86
|||||||||||||||||||||||||| | || || |||| ||| ||| ||| ||
Sbjct: 2 tatgtgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttgt 61
Query: 87 ggatggcgtatgaggagccatgcatattcc 116
|||||||||||||||||||| |||||||||
Sbjct: 62 ggatggcgtatgaggagccaagcatattcc 91
>41088_tcc-MIR160b:mirbase
Length = 120
Score = 58.0 bits (29), Expect = 2e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtcaatcgaaacatcgatggcctccgtggat 90
||||||||||||||||||||||||||| || | ||| | | || |||||| |||||||
Sbjct: 21 tgcctggctccctgtatgccatttgcaaagcccatcaagagtccggtggccttcgtggat 80
Query: 91 ggcgtatgaggagccatgcat 111
||| | ||||||||||||||
Sbjct: 81 ggcatgcgaggagccatgcat 101
>41576_vvi-MIR160d:mirbase
Length = 102
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgcagagtc 62
||||||||||||||||||||||||||| ||||
Sbjct: 11 tgcctggctccctgtatgccatttgcaaagtc 42
>40658_mtr-MIR160:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgccatttgcagagt 61
|||||||||||||||||||||||||| |||||
Sbjct: 20 gtgcctggctccctgtatgccatttgtagagt 51
>41529_sly-MIR160a:mirbase
Length = 129
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgca 57
|||||||||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgccatttgca 46
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 89 atggcgtatgaggagccatgcatattcc 116
|||||||||||||||||| |||||||||
Sbjct: 81 atggcgtatgaggagccaagcatattcc 108
>40339_rco-MIR160a:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttg 55
|||||||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgccatttg 30
>41166_aqc-MIR160b:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgc 56
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccatttgc 26
>41312_ptc-MIR160h:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgccatttgca 57
|||||||||||||||| ||||||||||||
Sbjct: 9 tgtgcctggctccctgcatgccatttgca 37
>42703_zma-MIR160c:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgcca 27
>42677_ttu-MIR160:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 6 atgtgcctggctccctgtatgcca 29
>41925_osa-MIR160c:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgcca 27
>41734_bdi-MIR160d:mirbase
Length = 150
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtgcctggctccctgtatgcca 51
||||||||||||||||||||||||
Sbjct: 28 atgtgcctggctccctgtatgcca 51
>42702_zma-MIR160b:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgcca 41
>41923_osa-MIR160a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>41733_bdi-MIR160c:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 29 tgtgcctggctccctgtatgcca 51
>41575_vvi-MIR160c:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgcca 31
>39375_pab-MIR160b:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 ttatgtgcctggctccctgtatgccat 52
|||| ||||||||||||||||||||||
Sbjct: 15 ttatctgcctggctccctgtatgccat 41
>39374_pab-MIR160a:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgtgcctggctccctgtatgcca 51
|||||||||||||||||||||||
Sbjct: 12 tgtgcctggctccctgtatgcca 34
>42701_zma-MIR160a:mirbase
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 9 gtgcctggctccctgtatgcca 30
>41924_osa-MIR160b:mirbase
Length = 139
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgcca 50
>41732_bdi-MIR160b:mirbase
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 30 gtgcctggctccctgtatgcca 51
>40020_ath-MIR160b:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgcca 25
>39808_aly-MIR160b:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtgcctggctccctgtatgcca 51
||||||||||||||||||||||
Sbjct: 20 gtgcctggctccctgtatgcca 41
>39731_smo-MIR160a:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccat 52
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>39459_ppt-MIR160e:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgccatttgc 56
||||||||||||||||||||| ||||
Sbjct: 30 tgcctggctccctgtatgccacttgc 55
>42707_zma-MIR160g:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgcca 22
>42705_zma-MIR160e:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgcca 29
>42704_zma-MIR160d:mirbase
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>42636_tae-MIR160:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgcca 42
>42500_sbi-MIR160e:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>42499_sbi-MIR160d:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>42498_sbi-MIR160c:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>42497_sbi-MIR160b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>42496_sbi-MIR160a:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>41926_osa-MIR160d:mirbase
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgcca 28
>41869_far-MIR160:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 53 tgcctggctccctgtatgcca 73
>41731_bdi-MIR160a:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 32 tgcctggctccctgtatgcca 52
>41308_ptc-MIR160d:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>41305_ptc-MIR160a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>40340_rco-MIR160b:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>40021_ath-MIR160c:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>39809_aly-MIR160c:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 24 tgcctggctccctgtatgcca 44
>39732_smo-MIR160b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33
>39460_ppt-MIR160f:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>39455_ppt-MIR160a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 tgcctggctccctgtatgcca 51
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
