miRNEST 2.0, an integrative microRNA resource :: BLAST
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaactacttt 38
||||||||||||||||||||||||||||| ||||
Sbjct: 2 gtcatgcttttccacagctttcttgaacttcttt 35
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtgggaggacatgg 113
||||||||||||||||||||||| ||||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatgg 145
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcctgtcatgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||||||||
Sbjct: 1 tcctgccatgcttttccacagctttcttgaact 33
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaact 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtgggaggacatgg 113
||||||||||||||| ||||||| ||||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatgg 154
>41243_csi-MIR396c:mirbase
Length = 178
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 2 cctgtcatgcttttccacagctttcttgaactacttt 38
||||||||| |||||||||||||||||||||| ||||
Sbjct: 1 cctgtcatgtttttccacagctttcttgaacttcttt 37
>41212_ccl-MIR396:mirbase
Length = 277
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||||
Sbjct: 134 gtcatgcttttccacagctttcttgaact 162
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 86 agctcaagaaagctgtgggaggacatggca 115
||||||||||||||||||||| ||||||||
Sbjct: 233 agctcaagaaagctgtgggagaacatggca 262
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 tcctgtcatgcttttccacagctttcttgaact 33
||||||||||||||||||| |||||||||||||
Sbjct: 137 tcctgtcatgcttttccacggctttcttgaact 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 81 atagaagctcaagaaagctgtgggaggacatggcaa 116
||||||| ||||||||||||||| | |||||||||
Sbjct: 45 atagaagttcaagaaagctgtggaataacatggcaa 10
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40476_gma-MIR396d:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaact 30
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 82 tagaagctcaagaaagctgtgggaggacatggcaa 116
||||||||||||||||||||||||| | |||||||
Sbjct: 74 tagaagctcaagaaagctgtgggagaatatggcaa 108
>40475_gma-MIR396c:mirbase
Length = 117
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tcctgtcatgcttttccacagctttcttgaact 33
|||||| ||||||||||||||||||||||||||
Sbjct: 8 tcctgttatgcttttccacagctttcttgaact 40
>40474_gma-MIR396b:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaact 40
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 82 tagaagctcaagaaagctgtgggaggacatggcaa 116
||||||||||||||||||||||||| | |||||||
Sbjct: 84 tagaagctcaagaaagctgtgggagaatatggcaa 118
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaact 40
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtgggaggacatggcaa 116
|||||||||||||||||||||| |||||||||
Sbjct: 109 gaagctcaagaaagctgtgggaaaacatggcaa 141
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 tgcttttccacagctttcttgaactacttt 38
||||||||||||||||||||||||| ||||
Sbjct: 1 tgcttttccacagctttcttgaacttcttt 30
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 82 tagaagctcaagaaagctgtgggag 106
|||||||||||||||||||||||||
Sbjct: 65 tagaagctcaagaaagctgtgggag 89
>39426_pta-MIR396:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 tgtcatgcttttccacagctttcttgaact 33
|||||| |||||||||||||||||||||||
Sbjct: 7 tgtcatacttttccacagctttcttgaact 36
>40379_rco-MIR396:mirbase
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgcttttccacagctttcttgaact 33
|||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaact 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 89 tcaagaaagctgtgggaggacatg 112
|||||||||||||||||| |||||
Sbjct: 101 tcaagaaagctgtgggagaacatg 124
>40086_ath-MIR396b:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtcatgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaact 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 gaagctcaagaaagctgtggga 105
||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125
>39379_pab-MIR396a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaacta 34
|||||| |||||||||||||||||||||
Sbjct: 9 catgctcttccacagctttcttgaacta 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 agctcaagaaagctgtggga 105
||||||||||||||||||||
Sbjct: 64 agctcaagaaagctgtggga 83
>42584_sbi-MIR396c:mirbase
Length = 162
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaact 40
>42028_osa-MIR396c:mirbase
Length = 141
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||| |||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaact 30
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||||||||||| |||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaact 30
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
|||| ||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaact 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 6 tcatgcttttccacagctttcttgaact 33
||||||| |||||| |||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaact 75
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 catgcttttccacagctttcttgaact 33
||||||||||||| |||||||||||||
Sbjct: 14 catgcttttccacggctttcttgaact 40
>39878_aly-MIR396b:mirbase
Length = 188
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 agaagctcaagaaagctgtggga 105
|||||||||||||||||||||||
Sbjct: 131 agaagctcaagaaagctgtggga 153
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttttccacagctttcttgaact 33
||||||||||||||||||||||
Sbjct: 30 ttttccacagctttcttgaact 51
>39741_smo-MIR396:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tcatgcttttccacagctttcttgaac 32
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
>41242_csi-MIR396b:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttttccacagctttcttgaact 33
||||||||||||||||||||||
Sbjct: 18 ttttccacagctttcttgaact 39
>41138_tcc-MIR396a:mirbase
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttttccacagctttcttgaact 33
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>42812_zma-MIR396f:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttccacagctttcttgaact 33
|||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaact 21
>42811_zma-MIR396e:mirbase
Length = 166
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttccacagctttcttgaact 33
|||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaact 21
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttccacagctttcttgaact 33
|||||||||||||||||||||
Sbjct: 31 tttccacagctttcttgaact 51
>42814_zma-MIR396h:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 98 ttccacagctttcttgaact 79
>42813_zma-MIR396g:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaact 92
>42808_zma-MIR396b:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42807_zma-MIR396a:mirbase
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42472_ssp-MIR396:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>42461_sof-MIR396:mirbase
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42027_osa-MIR396b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>42026_osa-MIR396a:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41662_vvi-MIR396c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41241_csi-MIR396a:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 ttttccacagctttcttgaa 31
||||||||||||||||||||
Sbjct: 109 ttttccacagctttcttgaa 90
>41189_aqc-MIR396b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>41058_ghr-MIR396b:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40646_lja-MIR396:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>40477_gma-MIR396e:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 7 ttccacagctttcttgaact 26
>40473_gma-MIR396a:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40296_bna-MIR396a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>40085_ath-MIR396a:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>39877_aly-MIR396a:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttccacagctttcttgaact 33
||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaact 43
