miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41710_vvi-MIR3631a:mirbase
Length = 223
Score = 196 bits (99), Expect = 4e-51
Identities = 108/111 (97%)
Strand = Plus / Plus
Query: 24 ctattcagctaaaagtaacatgttgacatcatccaatataactaaactgaacctattgat 83
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 54 ctattcagctaaaagtaacatgttgacatcatccaatataattaaactgaacctattgat 113
Query: 84 aacaagttcattttagctatgttggatgatgtcaataagttacttttaact 134
|||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 114 aacaagttcattttagctatattggatgatgtcaacaagttacttttaact 164
Score = 79.8 bits (40), Expect = 6e-16
Identities = 91/108 (84%)
Strand = Plus / Minus
Query: 24 ctattcagctaaaagtaacatgttgacatcatccaatataactaaactgaacctattgat 83
|||||||| |||||||||| |||||||||||||||||||| ||||| ||||| | ||
Sbjct: 170 ctattcagttaaaagtaacttgttgacatcatccaatatagctaaaatgaacttgttatc 111
Query: 84 aacaagttcattttagctatgttggatgatgtcaataagttactttta 131
|| | ||||| |||| ||| |||||||||||||| | ||||||||||
Sbjct: 110 aataggttcagtttaattatattggatgatgtcaacatgttactttta 63
>41712_vvi-MIR3631c:mirbase
Length = 335
Score = 115 bits (58), Expect = 1e-26
Identities = 91/102 (89%)
Strand = Plus / Plus
Query: 33 taaaagtaacatgttgacatcatccaatataactaaactgaacctattgataacaagttc 92
||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||
Sbjct: 126 taaaagtaacatgttgacatcatccaatataactaaactcaacatattaataataagttc 185
Query: 93 attttagctatgttggatgatgtcaataagttacttttaact 134
| |||| || ||||||||| |||| |||||||||||||||
Sbjct: 186 actttaatcatattggatgatatcaacaagttacttttaact 227
Score = 91.7 bits (46), Expect = 2e-19
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 25 tattcagctaaaagtaacatgttgacatcatccaatataactaaactgaacctattgata 84
||||||| |||||||||| |||||| |||||||||||| | |||| ||||| |||| ||
Sbjct: 232 tattcagttaaaagtaacttgttgatatcatccaatatgattaaagtgaacttattatta 173
Query: 85 acaagttcattttagctatgttggatgatgtcaataagttacttttaactaaat 138
| | ||| | ||||| ||| |||||||||||||| | |||||||||||||||||
Sbjct: 172 atatgttgagtttagttatattggatgatgtcaacatgttacttttaactaaat 119
>41713_vvi-MIR3631d:mirbase
Length = 250
Score = 109 bits (55), Expect = 7e-25
Identities = 95/108 (87%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 24 ctattcagctaaaagtaacatgttgacatcatccaatataactaaactgaacctattgat 83
|||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct: 147 ctattcagataaaagtaacatgttgacatcatccaatataattaaactgaacat----at 202
Query: 84 aacaagttcattttagctatgttggatgatgtcaataagttactttta 131
||||||||||||||| |||||||||| || |||||| |||||||||
Sbjct: 203 aacaagttcattttaattatgttggataatatcaatagattactttta 250
Score = 48.1 bits (24), Expect = 2e-06
Identities = 66/78 (84%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 58 aatataactaaactgaacctattg---ataacaagttca-ttttagctatgttggatgat 113
|||||||||||||| ||| ||||| |||||||||||| ||||| |||||||| ||||
Sbjct: 78 aatataactaaactaaacttattgataataacaagttcacttttaattatgttggttgat 19
Query: 114 gtcaataagttactttta 131
| |||| ||||||||||
Sbjct: 18 attaataggttactttta 1
