miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42642_tae-MIR319:mirbase
Length = 211
Score = 186 bits (94), Expect = 6e-48
Identities = 192/225 (85%), Gaps = 16/225 (7%)
Strand = Plus / Plus
Query: 29 tttgagggagctttcttctgtccacccatgggaggtagcggggattgaacgagctgccga 88
|||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3 tttgagggagctcacttcagtccactcatgggaggtagcggggattgaacgagctgccga 62
Query: 89 ctcattcactcgaacacacagtggataactggatatgcagactaatccaaggcataatat 148
||||||||||||| |||||||| |||| || |||||| |||| ||||||
Sbjct: 63 ctcattcactcgagcacacagtagata--------tg-agactagtccagggcata---- 109
Query: 149 ctactagtgtggaataatatctactgtgtgaatgagcgaatgaagcgggagattgttctc 208
| ||| || | ||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct: 110 ---ccagtatgttacaatatgtactgtgcgaatgagcgaatgcagcgggagattgttctc 166
Query: 209 tctttcctcctccatgcttggactgaagggagctccctcacctct 253
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 167 tctttcctcctccatgcttggactgaagggagctccctcatctct 211
>40070_ath-MIR319b:mirbase
Length = 172
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 222 atgcttggactgaagggagctccct 246
|||||||||||||||||||||||||
Sbjct: 148 atgcttggactgaagggagctccct 172
>39859_aly-MIR319b:mirbase
Length = 246
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 222 atgcttggactgaagggagctccct 246
|||||||||||||||||||||||||
Sbjct: 187 atgcttggactgaagggagctccct 211
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccct 246
||||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctccct 182
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccct 246
||||||||||||||||||||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
Score = 42.1 bits (21), Expect = 2e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 36 gagctttcttctgtccacccatgggaggtagcggggattgaacgagctgccgactcattc 95
||||||||||| |||||| |||||| || || || |||||| ||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtagg-attgaattagctgccgactcattc 71
Query: 96 a 96
|
Sbjct: 72 a 72
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccct 246
||||||||||||||||||||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccct 246
||||||||||||||||||||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>40703_mtr-MIR319:mirbase
Length = 207
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccct 246
||||||||||||||||||||||||
Sbjct: 166 tgcttggactgaagggagctccct 189
>40369_rco-MIR319c:mirbase
Length = 188
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccct 246
||||||||||||||||||||||||
Sbjct: 160 tgcttggactgaagggagctccct 183
>41282_ctr-MIR319:mirbase
Length = 186
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccc 245
|||||||||||||||||||||||
Sbjct: 154 tgcttggactgaagggagctccc 176
>40368_rco-MIR319b:mirbase
Length = 179
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccctc 247
|||||||||||||||||||||||
Sbjct: 153 cttggactgaagggagctccctc 175
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccct 183
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctcc 244
||||||||||||||||||||||
Sbjct: 173 tgcttggactgaagggagctcc 194
Score = 40.1 bits (20), Expect = 9e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 73 ttgaacgagctgccgactcattca 96
|||||| |||||||||||||||||
Sbjct: 52 ttgaactagctgccgactcattca 75
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctcc 244
||||||||||||||||||||||
Sbjct: 171 tgcttggactgaagggagctcc 192
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 36 gagctttcttctgtccacccatgggaggtagcggggattgaacgagctgccgactcattc 95
||||||||||| |||||| |||||| ||||| ||||| || ||||||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtag-taggatttaattagctgccgactcattc 71
Query: 96 a 96
|
Sbjct: 72 a 72
>41185_aqc-MIR319:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccct 175
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 155 cttggactgaagggagctccct 176
>40465_gma-MIR319b:mirbase
Length = 208
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccct 190
>40464_gma-MIR319a:mirbase
Length = 207
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccct 189
>40367_rco-MIR319a:mirbase
Length = 211
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccct 206
>40069_ath-MIR319a:mirbase
Length = 176
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 226 ttggactgaagggagctccctc 247
||||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccctc 175
>39858_aly-MIR319a:mirbase
Length = 221
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 226 ttggactgaagggagctccctc 247
||||||||||||||||||||||
Sbjct: 177 ttggactgaagggagctccctc 198
>39740_smo-MIR319:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccct 246
||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccct 206
>42783_zma-MIR319d:mirbase
Length = 212
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccctc 247
|||||||||||||||| ||||||||
Sbjct: 171 tgcttggactgaagggtgctccctc 195
>42781_zma-MIR319b:mirbase
Length = 213
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccctc 247
|||||||||||||||| ||||||||
Sbjct: 172 tgcttggactgaagggtgctccctc 196
>42563_sbi-MIR319:mirbase
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccctc 247
|||||||||||||||| ||||||||
Sbjct: 188 tgcttggactgaagggtgctccctc 212
>41995_osa-MIR319b:mirbase
Length = 197
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 223 tgcttggactgaagggagctccctc 247
|||||||||||||||| ||||||||
Sbjct: 165 tgcttggactgaagggtgctccctc 189
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 226 ttggactgaagggagctccct 246
|||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccct 177
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 224 gcttggactgaagggagctcc 244
|||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctcc 428
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccc 245
|||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctccc 167
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccc 245
|||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctccc 165
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctccc 245
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 226 ttggactgaagggagctccc 245
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctcc 244
||||||||||||||||||||
Sbjct: 149 cttggactgaagggagctcc 168
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctcc 244
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 225 cttggactgaagggagctcc 244
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
