miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41796_bdi-MIR396f:mirbase
Length = 161
Score = 319 bits (161), Expect = 4e-88
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 13 gagatgcgcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgttct 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagatgcgcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgttct 60
Query: 73 cctctgaattgtgtcgtggaattgcgggcttgttctttatccgtcgatctctccgcctgt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctctgaattgtgtcgtggaattgcgggcttgttctttatccgtcgatctctccgcctgt 120
Query: 133 tgatggttcaagaaagcccatggaaaccatgccgccatctt 173
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatggttcaagaaagcccatggaaaccatgccgccatctt 161
>42029_osa-MIR396d:mirbase
Length = 142
Score = 103 bits (52), Expect = 5e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 14 agatgcgcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 agatgtgcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 58
>42031_osa-MIR396e:mirbase
Length = 184
Score = 99.6 bits (50), Expect = 7e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 20 gcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 69
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 50
Score = 79.8 bits (40), Expect = 7e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 128 cctgttgatggttcaagaaagcccatggaaaccatgccgc 167
||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cctgttgatggttcaagaaagcccatggaaaccatgccgc 184
>42030_osa-MIR396e:mirbase
Length = 184
Score = 99.6 bits (50), Expect = 7e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 20 gcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 69
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgggcatgctttccacaggctttcttgaactgtgaactcgtgggggtgt 50
Score = 79.8 bits (40), Expect = 7e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 128 cctgttgatggttcaagaaagcccatggaaaccatgccgc 167
||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cctgttgatggttcaagaaagcccatggaaaccatgccgc 184
>42810_zma-MIR396d:mirbase
Length = 74
Score = 87.7 bits (44), Expect = 3e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 21 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 64
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
>42809_zma-MIR396c:mirbase
Length = 74
Score = 87.7 bits (44), Expect = 3e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 21 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 64
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
>42586_sbi-MIR396e:mirbase
Length = 189
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 30 tttccacaggctttcttgaactgtgaactcgtgggggt 67
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtgggggt 38
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 128 cctgttgatggttcaagaaagcccatggaaac 159
||||||||||||||||||||||||||||||||
Sbjct: 158 cctgttgatggttcaagaaagcccatggaaac 189
>41791_bdi-MIR396a:mirbase
Length = 209
Score = 69.9 bits (35), Expect = 7e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 20 gcgggcatgctttccacaggctttcttgaactgtgaactcgtg 62
|||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 21 gcggccatgctctccacaggctttcttgaactgtgaactcgtg 63
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 130 tgttgatggttcaagaaagcccatggaaaccatg 163
||||||||||||||||||| || |||||| ||||
Sbjct: 148 tgttgatggttcaagaaagtccttggaaaacatg 181
>42033_osa-MIR396f:mirbase
Length = 176
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 25 catgctttccacaggctttcttgaactgtgaactcgtg 62
|||||| |||||||||||||||||||||||||||||||
Sbjct: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
>42032_osa-MIR396f:mirbase
Length = 176
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 25 catgctttccacaggctttcttgaactgtgaactcgtg 62
|||||| |||||||||||||||||||||||||||||||
Sbjct: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
>41875_far-MIR396:mirbase
Length = 170
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 20 gcgggcatgctttccacaggctttcttgaactgtgaactcg 60
|||| |||||| |||||||||||||||||||||||||||||
Sbjct: 1 gcggccatgctctccacaggctttcttgaactgtgaactcg 41
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 130 tgttgatggttcaagaaagcccatggaaaccatgcc 165
|||| |||||||||||||| || |||||| ||||||
Sbjct: 95 tgttcatggttcaagaaagtccttggaaaacatgcc 130
>42585_sbi-MIR396d:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 32 tccacaggctttcttgaactgtgaactcg 60
|||||||||||||||||||||||||||||
Sbjct: 2 tccacaggctttcttgaactgtgaactcg 30
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 130 tgttgatggttcaagaaagcccatggaa 157
||||||||||||||||||| || |||||
Sbjct: 69 tgttgatggttcaagaaagtccttggaa 96
>42035_osa-MIR396h:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tttccacaggctttcttgaac 50
|||||||||||||||||||||
Sbjct: 109 tttccacaggctttcttgaac 129
>42034_osa-MIR396g:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tttccacaggctttcttgaac 50
|||||||||||||||||||||
Sbjct: 149 tttccacaggctttcttgaac 169
>42036_osa-MIR396i:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ttccacaggctttcttgaac 50
||||||||||||||||||||
Sbjct: 90 ttccacaggctttcttgaac 109
