miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 260 bits (131), Expect = 3e-70
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 10 cagcacatgcgaggaagttcctgcagggtcgaattgggaacacatgagatggatggtccg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcacatgcgaggaagttcctgcagggtcgaattgggaacacatgagatggatggtccg 60
Query: 70 ctgagctctgagctcgagctcggccatgtgttctcaggtcgcccctgttgggtcttccgt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgagctctgagctcgagctcggccatgtgttctcaggtcgcccctgttgggtcttccgt 120
Query: 130 gccatggattg 140
|||||||||||
Sbjct: 121 gccatggattg 131
>42645_tae-MIR398:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 18 gcgaggaagttcctgcagggtcgaattgggaacacatg 55
|||||||| ||||||| |||||||| ||||||||||||
Sbjct: 5 gcgaggaaattcctgcggggtcgaactgggaacacatg 42
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccc 114
|||||||||||||||||||||
Sbjct: 83 catgtgttctcaggtcgcccc 103
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 ccatgtgttctcaggtcgcccctg 116
||||||||||||||||||||||||
Sbjct: 69 ccatgtgttctcaggtcgcccctg 92
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccctg 116
|||||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccctg 78
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccctg 116
|||||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccctg 78
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccctg 116
|||||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccctg 88
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccctg 116
|||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccctg 76
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccctg 116
|||||||||||||||||||||||
Sbjct: 60 catgtgttctcaggtcgcccctg 82
>40382_rco-MIR398b:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccctg 116
|||||||||||||||||||||||
Sbjct: 99 catgtgttctcaggtcgcccctg 121
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 atgtgttctcaggtcgcccctg 116
||||||||||||||||||||||
Sbjct: 84 atgtgttctcaggtcgcccctg 105
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 94 catgtgttctcaggtcgcccctgttggg 121
|||||||||||| ||||| |||||||||
Sbjct: 43 catgtgttctcatgtcgctcctgttggg 16
>42818_zma-MIR398b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccc 114
|||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcgcccc 105
>42817_zma-MIR398a:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccc 114
|||||||||||||||||||||
Sbjct: 117 catgtgttctcaggtcgcccc 137
>42588_sbi-MIR398:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 catgtgttctcaggtcgcccc 114
|||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccc 106
>42040_osa-MIR398b:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 tgtgttctcaggtcgcccctg 116
|||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctg 78
>40730_mtr-MIR398c:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 tgtgttctcaggtcgcccctg 116
|||||||||||||||||||||
Sbjct: 62 tgtgttctcaggtcgcccctg 82
