miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41888_hvu-MIR168:mirbase
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gtccgtcgccgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtccgtcgccgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgac 60
Query: 61 gggccggatcccgccttgcaccaagtgaatcggagccggcgcagcg 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggccggatcccgccttgcaccaagtgaatcggagccggcgcagcg 106
>41753_bdi-MIR168:mirbase
Length = 136
Score = 176 bits (89), Expect = 2e-45
Identities = 99/101 (98%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 7 cgccgccgcctcgggctcgcttggtgcagatcgggaccctccgcccg-ccccgacgggcc 65
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 15 cgccgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgcccccgccgggcc 74
Query: 66 ggatcccgccttgcaccaagtgaatcggagccggcgcagcg 106
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ggatcccgccttgcaccaagtgaatcggagccggcgcagcg 115
>42470_ssp-MIR168a:mirbase
Length = 99
Score = 151 bits (76), Expect = 1e-37
Identities = 92/96 (95%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggat 69
|||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct: 5 cgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggat 63
Query: 70 cccgccttgcaccaagtgaatcggagccggcgcagc 105
||||||||||||||||||||||||||||||||||||
Sbjct: 64 cccgccttgcaccaagtgaatcggagccggcgcagc 99
>42459_sof-MIR168a:mirbase
Length = 104
Score = 151 bits (76), Expect = 1e-37
Identities = 92/96 (95%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggat 69
|||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct: 8 cgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggat 66
Query: 70 cccgccttgcaccaagtgaatcggagccggcgcagc 105
||||||||||||||||||||||||||||||||||||
Sbjct: 67 cccgccttgcaccaagtgaatcggagccggcgcagc 102
>42741_zma-MIR168a:mirbase
Length = 104
Score = 145 bits (73), Expect = 7e-36
Identities = 92/97 (94%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggat 69
|||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct: 8 cgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggat 66
Query: 70 cccgccttgcaccaagtgaatcggagccggcgcagcg 106
|||||||||||||||||||||||||||||||| ||||
Sbjct: 67 cccgccttgcaccaagtgaatcggagccggcggagcg 103
>42742_zma-MIR168b:mirbase
Length = 104
Score = 137 bits (69), Expect = 2e-33
Identities = 91/97 (93%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggat 69
||||| |||||||||||||||||||||||||||||| ||||||| || |||||| |||||
Sbjct: 8 cgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggat 66
Query: 70 cccgccttgcaccaagtgaatcggagccggcgcagcg 106
||||||||||| |||||||||||||||||||||||||
Sbjct: 67 cccgccttgcatcaagtgaatcggagccggcgcagcg 103
>42460_sof-MIR168b:mirbase
Length = 103
Score = 117 bits (59), Expect = 2e-27
Identities = 82/87 (94%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 19 gggctcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttg 78
|||||||||||| |||||||||||||| ||||||| || |||||| ||||||||||||||
Sbjct: 17 gggctcgcttgg-gcagatcgggacccgccgcccggcc-gacgggacggatcccgccttg 74
Query: 79 caccaagtgaatcggagccggcgcagc 105
|||||||||||||||||||||||||||
Sbjct: 75 caccaagtgaatcggagccggcgcagc 101
>41962_osa-MIR168a:mirbase
Length = 87
Score = 109 bits (55), Expect = 4e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 13 cgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgac-gggccggatcc 71
||||||||||||||||||||||||||||||||| ||||| | | | | |||||||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 72 cgccttgcaccaagtgaatcggagccg 98
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>41961_osa-MIR168a:mirbase
Length = 87
Score = 109 bits (55), Expect = 4e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 13 cgcctcgggctcgcttggtgcagatcgggaccctccgcccgccccgac-gggccggatcc 71
||||||||||||||||||||||||||||||||| ||||| | | | | |||||||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 72 cgccttgcaccaagtgaatcggagccg 98
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>42528_sbi-MIR168:mirbase
Length = 106
Score = 105 bits (53), Expect = 6e-24
Identities = 87/97 (89%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 10 cgccgcctcgggctcgcttggtgcagatcgggaccctccgcc-cgccccgacgggccgga 68
||||||||||||||||||||||||||||||||||| ||||| || | |||||| | ||
Sbjct: 8 cgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacaga 67
Query: 69 tcccgccttgcaccaagtgaatcggagccggcgcagc 105
||||||||||||||||||||||| ||||||| |||||
Sbjct: 68 tcccgccttgcaccaagtgaatccgagccggagcagc 104
>41596_vvi-MIR168:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 gatcccgccttgcaccaagtgaatcggagccggc 100
|||||||||||||| ||| |||||||||| ||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagacggc 132
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcggag 95
||||||||||||||| ||| ||||||||||
Sbjct: 106 ggatcccgccttgcatcaactgaatcggag 135
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcggag 95
||||||||||||||| ||| ||||||||||
Sbjct: 130 ggatcccgccttgcatcaactgaatcggag 159
>41215_crt-MIR168:mirbase
Length = 201
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcggag 95
||||||||||||||| ||| ||||||||||
Sbjct: 139 ggatcccgccttgcatcaactgaatcggag 168
>41210_ccl-MIR168:mirbase
Length = 176
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcggag 95
||||||||||||||| ||| ||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggag 167
>41101_tcc-MIR168:mirbase
Length = 167
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcggag 95
||||||||||||||| ||| ||||||||||
Sbjct: 123 ggatcccgccttgcatcaactgaatcggag 152
>40448_gma-MIR168:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcggag 95
||||||||||||||| ||| ||||||||||
Sbjct: 84 ggatcccgccttgcatcaactgaatcggag 113
>40043_ath-MIR168a:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcgga 94
||||||||||||||| ||| |||||||||
Sbjct: 99 ggatcccgccttgcatcaactgaatcgga 127
>39832_aly-MIR168a:mirbase
Length = 155
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 66 ggatcccgccttgcaccaagtgaatcgga 94
||||||||||||||| ||| |||||||||
Sbjct: 105 ggatcccgccttgcatcaactgaatcgga 133
