miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41233_csi-MIR172a:mirbase
Length = 162
Score = 143 bits (72), Expect = 4e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ccttaaaacagtcgttgctcgctgtagcagcgtcctcaagattcacatccagtctaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ccttaaaacagtcgttgctcgctgtagcagcgtcctcaagattcacatccagtctaaagg 64
Query: 61 caaaagcagcaa 72
||||||||||||
Sbjct: 65 caaaagcagcaa 76
Score = 89.7 bits (45), Expect = 6e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggcgattaatgactagctacca 154
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gagaatcttgatgatgctgcaacggcgattaatgactagctacca 158
>41234_csi-MIR172b:mirbase
Length = 127
Score = 99.6 bits (50), Expect = 6e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 15 ttgctcgctgtagcagcgtcctcaagattcacatccagtctaaaggcaaaagcagcaa 72
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgctcgctgtagcagcgacgtcaagattcacatccagtctaaaggcaaaagcagcaa 58
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggcgat 138
||||||||||||||||| |||||||||||
Sbjct: 96 gagaatcttgatgatgcggcaacggcgat 124
>41125_tcc-MIR172b:mirbase
Length = 160
Score = 50.1 bits (25), Expect = 5e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggcgattaatgact 146
||||||||||||||||||||| |||| || |||||||
Sbjct: 119 gagaatcttgatgatgctgcatcggccataaatgact 155
>40066_ath-MIR172d:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggcgattaa 141
||||||||||||||||||||| |||| |||||
Sbjct: 87 gagaatcttgatgatgctgcagcggcaattaa 118
>39855_aly-MIR172d:mirbase
Length = 163
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggcgattaa 141
||||||||||||||||||||| |||| |||||
Sbjct: 111 gagaatcttgatgatgctgcagcggcaattaa 142
>41767_bdi-MIR172a:mirbase
Length = 153
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 98 gagaatcttgatgatgctgcatcggc 123
>41632_vvi-MIR172b:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 30 gagaatcttgatgatgctgcatcggc 5
>41631_vvi-MIR172a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 30 gagaatcttgatgatgctgcatcggc 5
>41400_ptc-MIR172f:mirbase
Length = 161
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 131 gagaatcttgatgatgctgcatcggc 156
>41396_ptc-MIR172b:mirbase
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 110 gagaatcttgatgatgctgcatcggc 135
>41128_tcc-MIR172e:mirbase
Length = 189
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 148 gagaatcttgatgatgctgcatcggc 173
>40063_ath-MIR172a:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 77 gagaatcttgatgatgctgcatcggc 102
>39852_aly-MIR172a:mirbase
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgcaacggc 135
||||||||||||||||||||| ||||
Sbjct: 98 gagaatcttgatgatgctgcatcggc 123
>42778_zma-MIR172d:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 53 gagaatcttgatgatgctgca 73
>42777_zma-MIR172c:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 102 gagaatcttgatgatgctgca 122
>42776_zma-MIR172b:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 105 gagaatcttgatgatgctgca 125
>42775_zma-MIR172a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 62 gagaatcttgatgatgctgca 82
>42560_sbi-MIR172d:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 67 gagaatcttgatgatgctgca 87
>42559_sbi-MIR172c:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 98 gagaatcttgatgatgctgca 118
>42557_sbi-MIR172a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 81 gagaatcttgatgatgctgca 101
>41993_osa-MIR172d:mirbase
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 90 gagaatcttgatgatgctgca 110
>41990_osa-MIR172a:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 78 gagaatcttgatgatgctgca 98
>41725_ata-MIR172:mirbase
Length = 277
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 208 gagaatcttgatgatgctgca 228
>41634_vvi-MIR172d:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 78 gagaatcttgatgatgctgca 98
>41543_sly-MIR172b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 114 gagaatcttgatgatgctgca 134
>41542_sly-MIR172a:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 85 gagaatcttgatgatgctgca 105
>41397_ptc-MIR172c:mirbase
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 98 gagaatcttgatgatgctgca 118
>41395_ptc-MIR172a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 99 gagaatcttgatgatgctgca 119
>41183_aqc-MIR172a:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 97 gagaatcttgatgatgctgca 117
>40463_gma-MIR172f:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 108 gagaatcttgatgatgctgca 128
>40459_gma-MIR172b:mirbase
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 113 gagaatcttgatgatgctgca 133
>40458_gma-MIR172a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 119 gagaatcttgatgatgctgca 139
>40324_bra-MIR172b:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 81 gagaatcttgatgatgctgca 101
>40323_bra-MIR172a:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 86 gagaatcttgatgatgctgca 106
>40307_bol-MIR172b:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 81 gagaatcttgatgatgctgca 101
>40306_bol-MIR172a:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 86 gagaatcttgatgatgctgca 106
>40065_ath-MIR172c:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 97 gagaatcttgatgatgctgca 117
>40064_ath-MIR172b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 70 gagaatcttgatgatgctgca 90
>39854_aly-MIR172c:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 97 gagaatcttgatgatgctgca 117
>39853_aly-MIR172b:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 110 gagaatcttgatgatgctgca 130
|||||||||||||||||||||
Sbjct: 92 gagaatcttgatgatgctgca 112
>41633_vvi-MIR172c:mirbase
Length = 138
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 109 gaatcttgatgatgctgcagcggc 132
>41402_ptc-MIR172h:mirbase
Length = 143
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 115 gaatcttgatgatgctgcagcggc 138
>41401_ptc-MIR172g:mirbase
Length = 143
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 115 gaatcttgatgatgctgcagcggc 138
>41399_ptc-MIR172e:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 105 gaatcttgatgatgctgcatcggc 128
>41398_ptc-MIR172d:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 154 gaatcttgatgatgctgcatcggc 177
>41124_tcc-MIR172a:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 116 gaatcttgatgatgctgcagcggc 139
>40462_gma-MIR172e:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggcgattaatgacta 147
||||||||||||||||||| | || || ||||||||
Sbjct: 115 gaatcttgatgatgctgcagcagcaataaatgacta 150
>40460_gma-MIR172c:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggcgattaatgacta 147
||||||||||||||||||| | || || ||||||||
Sbjct: 115 gaatcttgatgatgctgcagcagcaataaatgacta 150
>40366_rco-MIR172:mirbase
Length = 144
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 112 gaatcttgatgatgctgcaacggc 135
||||||||||||||||||| ||||
Sbjct: 120 gaatcttgatgatgctgcagcggc 143
