miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 117 bits (59), Expect = 3e-27
Identities = 145/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 1 gtggatcaggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggagga 60
|||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 1 gtgggtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggagga 60
Query: 61 aagcccaaactcttcttcgcctctagaactaggggctgagatttggtttccttgttttcc 120
||| ||||||||||||| |||||| || |||||| || || |||| ||||||||
Sbjct: 61 aagttcaaactcttcttcccctcta-aattaggggggtcgactt-gttttgatgttttcc 118
Query: 121 tgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 171
||||||||||||||||||||| || || |||||||||||||||| |||||
Sbjct: 119 cgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttgg 169
>42362_osa-MIR2118r:mirbase
Length = 175
Score = 89.7 bits (45), Expect = 7e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 61
||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 85.7 bits (43), Expect = 1e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 171
||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttgg 172
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 116 tttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
|||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 152
Score = 54.0 bits (27), Expect = 4e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaaag 63
|||||||||||| | |||||||| ||||| || || |||||||||||||||||||
Sbjct: 10 ggaagaggaagaca-gagggtctaagagctgtaggaatgggaacatggaggaaag 63
>42349_osa-MIR2118e:mirbase
Length = 177
Score = 73.8 bits (37), Expect = 4e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 tcaggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaaa 62
||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct: 7 tcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 69.9 bits (35), Expect = 6e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 ttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 171
||||||||||||||||||||||| ||| | || |||||||||||||| |||||||
Sbjct: 89 ttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgcttttgg 143
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 23 agagggtctgagagcggtgggcatgggaacatggaggaa 61
||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 20 agagggtctaagagcagtgggcatgggaacacggaggaa 58
>42356_osa-MIR2118l:mirbase
Length = 177
Score = 69.9 bits (35), Expect = 6e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 171
||||||||| |||| |||||| ||||||||| | |||| ||||||||||||||||||||
Sbjct: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttgg 175
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 69.9 bits (35), Expect = 6e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttcctt 167
||||||||||||||||||||| ||||||||||| | |||||||||| |||||||
Sbjct: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 gtgggcatgggaacatggaggaaagc 64
||||| ||||||||||||||||||||
Sbjct: 41 gtgggaatgggaacatggaggaaagc 66
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 115 ttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
|||||| |||||||||||| ||||| ||||| || |||||||||||||||||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttccttt 171
Score = 44.1 bits (22), Expect = 3e-05
Identities = 50/57 (87%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaaagagg--gtctgagagcggtgggcatgggaacatggaggaaa 62
|||||||||||| ||||||| |||| ||||| ||||| |||||||||| |||||||
Sbjct: 8 aggaagaggaag-aaagaggtagtctaagagcagtgggaatgggaacatagaggaaa 63
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 61
||||||||||| ||||| | ||| ||||| |||||||||||||||||||||||
Sbjct: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
Score = 46.1 bits (23), Expect = 9e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 117 ttcctgatgcctcccatgcctattgttctcagatgctccttcctctt 163
||||| ||||||||||| ||||| ||||| || || |||||||||||
Sbjct: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
||||||||||||| ||||||| |||| ||||| || |||||||||||||||||||
Sbjct: 86 tgttttcctgatgtctcccattcctacggttcttaggtgctccttcctcttccttt 141
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 63.9 bits (32), Expect = 4e-11
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 7 caggaagaggaagaaa-agagggtctgagagcggtgggcatgggaacatggaggaaagcc 65
|||||||||||||||| |||| | || ||||| ||||| |||||||||||||||||||||
Sbjct: 7 caggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagcc 66
>42353_osa-MIR2118i:mirbase
Length = 181
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
||||||||| |||||||||| |||||||| || |||| |||||||||||||||||
Sbjct: 118 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 60.0 bits (30), Expect = 6e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 115 ttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
||||||||||||||||||| ||||| ||||| || ||||| |||||||| ||||
Sbjct: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
>42352_osa-MIR2118h:mirbase
Length = 157
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttcc 165
||||||||||||||||| ||| ||||| ||||| | ||||||||||||||||
Sbjct: 105 tgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
>42359_osa-MIR2118o:mirbase
Length = 155
Score = 56.0 bits (28), Expect = 9e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 118 tcctgatgcctcccatgcctattgttctcagatgctccttcctcttcc 165
||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
Score = 50.1 bits (25), Expect = 6e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 61
|||||||||||||||||||| | |||| ||||||||||| ||||| |||||
Sbjct: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 33 agagcggtgggcatgggaacatggaggaaagccca 67
||||| ||||| |||||||||||||||||||||||
Sbjct: 3 agagcagtgggaatgggaacatggaggaaagccca 37
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 116 tttcctgatgcctcccatgcctattgttct 145
||||| |||||||||||| |||||||||||
Sbjct: 87 tttcccgatgcctcccattcctattgttct 116
>42361_osa-MIR2118q:mirbase
Length = 177
Score = 52.0 bits (26), Expect = 1e-07
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaa-agagggtctgagagcggtgggcatgggaacatggaggaaagcc 65
|||||||||||||| |||| ||| |||||| |||| || ||||||||||||||||||
Sbjct: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcc 66
>42288_osa-MIR1869:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 6e-07
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctcctt 157
|||||||| || ||||||||||||||||||||||| || |||||
Sbjct: 45 tgttttcccaatacctcccatgcctattgttctcaggtgttcctt 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 42 ggcatgggaacatggaggaaagcc 65
||||||||||||||||||||||||
Sbjct: 115 ggcatgggaacatggaggaaagcc 92
>42842_zma-MIR2118f:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 33 agagcggtgggcatgggaacatggaggaaagcc 65
||||| |||||||||||||||| | ||||||||
Sbjct: 3 agagcagtgggcatgggaacataggggaaagcc 35
>42357_osa-MIR2118m:mirbase
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 115 ttttcctgatgcctcccatgccta 138
||||||||||||||||||| ||||
Sbjct: 106 ttttcctgatgcctcccattccta 129
