miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42362_osa-MIR2118r:mirbase
Length = 175
Score = 178 bits (90), Expect = 9e-46
Identities = 156/176 (88%), Gaps = 4/176 (2%)
Strand = Plus / Plus
Query: 2 gtgagtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggagga 61
||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 1 gtgagtcgggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggagga 60
Query: 62 aaaaacatatatagttttcttcccctctaaagttagaggttgaaatttgctgtgtgtttt 121
| || || || |||||||||| |||||| ||||||||||| ||||||| | ||||
Sbjct: 61 agaac---atgtacttttcttccc-tctaaatttagaggttgagatttgctaagcatttt 116
Query: 122 tcccaatgcctcccatgcctacagttcttaggcactccttccacttcctgttggct 177
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 117 tcccaatgcctcccatgcctacagttcttaggtactccttccccttcctgttggct 172
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 73.8 bits (37), Expect = 4e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 7 tcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||||||||||||||||||| |||| ||||| | |||||||||||||||||||||
Sbjct: 6 tcaggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaaa 62
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 69.9 bits (35), Expect = 6e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 gtgagtcaggaagaggaagaaa-agagagtctaagagcagcaggcatgggaacatggagg 60
||||| |||||||||||||||| |||||| |||||||||| || |||||||||||||||
Sbjct: 1 gtgagccaggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggagg 60
Query: 61 aaa 63
|||
Sbjct: 61 aaa 63
Score = 52.0 bits (26), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 97 gaggttgaaatttgctgtgtgtttttcccaatgcctcccatgcctacagttcttaggcac 156
||||| |||||||| | || |||||||| ||||||||||| |||| ||||||| ||||
Sbjct: 96 gaggtggaaatttggtttggttttttcccgatgcctcccattcctatcgttcttaagcac 155
Query: 157 tccttccacttcct 170
| ||||| ||||||
Sbjct: 156 ttcttcctcttcct 169
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 6 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 5 gtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaaa 62
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 119 ttttcccaatgcctcccatgcctacagttcttaggcactccttccacttcc 169
||||||| |||||||||||||||| || |||||| |||||||| |||||
Sbjct: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaa 62
||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 56.0 bits (28), Expect = 9e-09
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 2 gtgagtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggagga 61
||||| |||||||||||||| |||| ||||||||||| ||| ||||||||||| ||||
Sbjct: 2 gtgagccaggaagaggaaga---gagactctaagagcagtaggaatgggaacatgaagga 58
Query: 62 aa 63
||
Sbjct: 59 aa 60
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 52.0 bits (26), Expect = 1e-07
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
|||||||||||| | ||| |||||||||| | ||| ||||||||||||||||||
Sbjct: 10 ggaagaggaagaca-gagggtctaagagctgtaggaatgggaacatggaggaaa 62
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttcttaggcactccttccacttcct 170
||||| |||||||||||| |||| ||||||||| |||||||| ||||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttcct 150
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 52.0 bits (26), Expect = 1e-07
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaa-agagagtctaagagcagcaggcatgggaacatggaggaaaaa 65
||||||||||||||| || ||||||||||||| || |||||||||| |||||||||
Sbjct: 8 aggaagaggaagaaagaggtagtctaagagcagtgggaatgggaacatagaggaaaaa 65
Score = 50.1 bits (25), Expect = 6e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 118 tttttcccaatgcctcccatgcctacagttcttaggcactccttccacttcct 170
|||||||| ||||||||||| |||| ||||||||| |||||||| ||||||
Sbjct: 117 tttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcct 169
>42288_osa-MIR1869:mirbase
Length = 138
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 31 ctaagagcagcaggcatgggaacatggaggaaa 63
||||||||| ||||||||||||||||||||||
Sbjct: 127 ctaagagcattaggcatgggaacatggaggaaa 95
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 119 ttttcccaatgcctcccatgccta 142
|||||||||| |||||||||||||
Sbjct: 43 ttttcccaatacctcccatgccta 20
>42357_osa-MIR2118m:mirbase
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 24 agagagtctaagagcagcaggcatgggaacatggaggaaa 63
||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 20 agagactctaagagcagtaggaatgggaacatgaaggaaa 59
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 127 atgcctcccatgcctacagttcttagg 153
||||||||||| |||||||||||||||
Sbjct: 114 atgcctcccattcctacagttcttagg 140
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 24 agagagtctaagagcagcaggcatgggaacatggaggaa 62
|||| |||||||||||| |||||||||||| |||||||
Sbjct: 20 agagggtctaagagcagtgggcatgggaacacggaggaa 58
>42359_osa-MIR2118o:mirbase
Length = 155
Score = 42.1 bits (21), Expect = 1e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaa 62
|||||||||||||||||| | | | |||||| |||||||| ||||| |||||
Sbjct: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
>42842_zma-MIR2118f:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 120 tttcccaatgcctcccatgcctacagttctta 151
||||||||||||| ||||||||| |||||||
Sbjct: 89 tttcccaatgccttccatgcctattgttctta 120
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 32 taagagcagcaggcatgggaacatggaggaaa 63
||||||||| || ||||||||||||||||||
Sbjct: 1 taagagcagtgggaatgggaacatggaggaaa 32
