miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42356_osa-MIR2118l:mirbase
Length = 177
Score = 139 bits (70), Expect = 8e-34
Identities = 144/166 (86%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 67
|||||||||||||||||||||||||||| || | ||||||| |||||| ||||||||||
Sbjct: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 68
Query: 68 acagcgtctttctcgtccactagaagtggggggtaaagataatgtttttgtgttttccta 127
|||| | ||||| |||||||||| | |||| | ||||||| |||||||||||||||
Sbjct: 69 acagtat-tttcttctccactagaattagggg-tggagataattcttttgtgttttccta 126
Query: 128 gtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 127 atgcttcccattcctattgttgttagatactccttcctcttccttt 172
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 121 tttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||| ||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 152
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
|||||||||||||||| || ||||| | ||||||||||||||||||||||
Sbjct: 127 tgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaa 63
||||||||||||||| | ||||||| ||| | ||||||||||||| |||||||
Sbjct: 8 aggaagaggaagaaagaggtagtctaagagcagtgggaatgggaacatagaggaaa 63
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 118 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||||| |||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 118 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||||| |||||||||| |||||||| || |||| |||||||||||||||||
Sbjct: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 61.9 bits (31), Expect = 2e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 114 tttgtgttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctt 172
||||||||||||| ||||||||||||||||||| ||| | | |||||||| |||||||
Sbjct: 101 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcc 170
|||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 122 tgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 67
||||||||||||||| ||| | ||||| ||| | ||||||||||||| |||||||||||
Sbjct: 8 aggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagcct 67
Query: 68 a 68
|
Sbjct: 68 a 68
Score = 52.0 bits (26), Expect = 1e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
|||||||||||||||| || |||| ||| |||||||||||||||||||
Sbjct: 127 tgcctcccattcctatcgttcttaagcacttcttcctcttcctttcagct 176
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 56.0 bits (28), Expect = 9e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 113 ttttgtgttttcctagtgcctcccattcctattgtccttagatactccttcctctt 168
|||||||| |||||| |||||||||||||||| || ||||| | |||||||||||
Sbjct: 76 ttttgtgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 54.0 bits (27), Expect = 4e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 120 ttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
||||||| |||||||||||||||| || ||||| | ||| |||||||| |||||||||
Sbjct: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 48.1 bits (24), Expect = 2e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 118 tgttttcctagtgcctcccattcctattgtccttagatactccttcctcttccttt 173
||||||||| || |||||||||||| || ||||| | |||||||||||||||||
Sbjct: 86 tgttttcctgatgtctcccattcctacggttcttaggtgctccttcctcttccttt 141
>42361_osa-MIR2118q:mirbase
Length = 177
Score = 46.1 bits (23), Expect = 9e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 67
|||||||||||||| ||| |||||| || || ||||| ||||||| |||||||||||
Sbjct: 9 ggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaaagcct 67
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 149 cttagatactccttcctcttcctttcagct 178
||||| ||||||||||||||||||| ||||
Sbjct: 145 cttaggtactccttcctcttcctttaagct 174
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 ggaatgggaacattgaggaaagcc 66
||||||||||||| ||||||||||
Sbjct: 12 ggaatgggaacatggaggaaagcc 35
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 129 tgcctcccattcctattgtcctta 152
||||||||||||||||||| ||||
Sbjct: 95 tgcctcccattcctattgttctta 118
