miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42357_osa-MIR2118m:mirbase
Length = 170
Score = 212 bits (107), Expect = 6e-56
Identities = 156/171 (91%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 1 ggtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaa 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgagccaggaagaggat-agagactctaagagcagtaggaatgggaacatgaaggaaa 59
Query: 61 gccaaattaagctctaacctctggtattggagatttggtctgatgattttcctgatgcct 120
|||||| |||||||||| |||| ||||||||||||| | | ||||||||||||||||
Sbjct: 60 gccaaaccaagctctaactcctggagttggagatttggtataacgattttcctgatgcct 119
Query: 121 cccattcctatagttcttaggtgctcgttcctcttactttcagctaacacc 171
|||||||||| ||||||||||| || ||||||||||||||| |||||||||
Sbjct: 120 cccattcctacagttcttaggtccttgttcctcttactttcggctaacacc 170
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 85.7 bits (43), Expect = 1e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
|||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctttcagct 176
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacat 52
|||||||||||| |||||||||||||
Sbjct: 30 tctaagagcagtgggaatgggaacat 55
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||
Sbjct: 116 ttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttt 169
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
|||||| ||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 152
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaaag 61
||||||||| ||||||||||||||||| |||||||
Sbjct: 29 tctaagagctgtaggaatgggaacatggaggaaag 63
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||| |||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 88 ttttcctgatgtctcccattcctacggttcttaggtgctccttcctcttccttt 141
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaaagc 62
|||||||||||| ||||||| |||||||||||||||
Sbjct: 26 tctaagagcagtgggaatggaaacatgaaggaaagc 61
>42843_zma-MIR2118g:mirbase
Length = 145
Score = 65.9 bits (33), Expect = 9e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 6 gccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaagc 62
|||||||| |||| || ||| |||||||||| ||||||| |||||||||||||||||
Sbjct: 1 gccaggaaaaggatgaaagattctaagagcactaggaataggaacatgaaggaaagc 57
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcc 151
|||||||||||||||| ||||||| | |||||||| ||| ||||
Sbjct: 88 ttttcctgatgcctcctattcctaaggctcttaggttctccttcc 132
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 65.9 bits (33), Expect = 9e-12
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggaaga----gagactctaagagcagtaggaatgggaacatgaagg 57
|||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct: 1 gtgagccaggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggagg 60
Query: 58 aaagcc 63
||||||
Sbjct: 61 aaagcc 66
Score = 54.0 bits (27), Expect = 4e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
|||||| |||||||||||||||||| ||||||| | || |||||||| |||||||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcctttcagct 176
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 65.9 bits (33), Expect = 9e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcc 151
||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct: 107 ttttcctgatgcctcccattcctattgttcttgggtgctccttcc 151
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 agcagtaggaatgggaacatgaaggaaagc 62
|||||| |||||||||||||| ||||||||
Sbjct: 37 agcagtgggaatgggaacatggaggaaagc 66
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 63.9 bits (32), Expect = 4e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||||| ||||| ||| |||||||||| |||||||| ||||
Sbjct: 89 ttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgcttt 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 10 ggaagaggaagagagactctaagagcagtaggaatgggaaca 51
||||||||||||||| |||||||||||| || |||||||||
Sbjct: 9 ggaagaggaagagagggtctaagagcagtgggcatgggaaca 50
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaa 59
|||||||||||| || ||||||||||| |||||
Sbjct: 21 tctaagagcagtgggcatgggaacatggaggaa 53
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 60.0 bits (30), Expect = 6e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||||||||||||||| ||||| ||||| || ||||| |||||||| ||||
Sbjct: 115 ttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttt 168
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 58.0 bits (29), Expect = 2e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
|||||| |||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctctt 161
>42352_osa-MIR2118h:mirbase
Length = 157
Score = 58.0 bits (29), Expect = 2e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
||||||||||||||| ||||||||| ||||| ||||||| ||||||||
Sbjct: 107 ttttcctgatgcctctcattcctatggttctagggtgctccttcctctt 155
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 gtaggaatgggaacatgaaggaaag 61
||||||||| |||||||||||||||
Sbjct: 32 gtaggaatgagaacatgaaggaaag 56
>42349_osa-MIR2118e:mirbase
Length = 177
Score = 56.0 bits (28), Expect = 9e-09
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 2 gtgagccaggaagaggaaga---gagactctaagagcagtaggaatgggaacatgaagga 58
||||| |||||||||||||| |||| ||||||||||| ||| ||||||||||| ||||
Sbjct: 2 gtgagtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggagga 61
Query: 59 aa 60
||
Sbjct: 62 aa 63
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 29 taagagcagtaggaatgggaacatgaaggaaagcc 63
|||||||||| |||||||||||||| |||||||||
Sbjct: 1 taagagcagtgggaatgggaacatggaggaaagcc 35
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 108 tttcctgatgcctcccattcctatagttctta 139
||||| |||||||||||||||||| |||||||
Sbjct: 87 tttcccgatgcctcccattcctattgttctta 118
>42353_osa-MIR2118i:mirbase
Length = 181
Score = 54.0 bits (27), Expect = 4e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttactttcagct 165
||||||| |||||||||||||||| || ||||| | ||| |||||||| |||||||||
Sbjct: 120 ttttcctagtgcctcccattcctattgtccttagatactccttcctcttcctttcagct 178
>42837_zma-MIR2118a:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 109 ttcctgatgcctcccattcctatagttcttagg 141
||||||||||||| ||||||||| |||||||||
Sbjct: 86 ttcctgatgcctctcattcctatggttcttagg 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaa 59
||||| |||||||| ||| |||||||||||||
Sbjct: 2 ctaagggcagtagggatgagaacatgaaggaa 33
>42288_osa-MIR1869:mirbase
Length = 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 28 ctaagagcagtaggaatgggaacatgaaggaaagcc 63
||||||||| |||| ||||||||||| |||||||||
Sbjct: 127 ctaagagcattaggcatgggaacatggaggaaagcc 92
>42359_osa-MIR2118o:mirbase
Length = 155
Score = 44.1 bits (22), Expect = 3e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 110 tcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
||||||||||||||| ||||| |||| | ||||||| ||||||||
Sbjct: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctctt 153
>42356_osa-MIR2118l:mirbase
Length = 177
Score = 44.1 bits (22), Expect = 3e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
||||||| |||| |||||||||||| ||| |||| | ||| |||||||| ||||
Sbjct: 119 ttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
>42362_osa-MIR2118r:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 27 tctaagagcagtaggaatgggaacatgaaggaa 59
|||||||||||| || ||||||||||| |||||
Sbjct: 29 tctaagagcagtgggcatgggaacatggaggaa 61
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 115 atgcctcccattcctatagttcttaggtgctcgttcc 151
||||||||||| |||| ||||||||||| ||| ||||
Sbjct: 122 atgcctcccatgcctacagttcttaggtactccttcc 158
>42345_osa-MIR2118a:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 gatgcctcccattcctatagttctt 138
|||||||||||||||||| ||||||
Sbjct: 136 gatgcctcccattcctatcgttctt 160
