miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42353_osa-MIR2118i:mirbase
Length = 181
Score = 139 bits (70), Expect = 8e-34
Identities = 144/166 (86%), Gaps = 2/166 (1%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 68
|||||||||||||||||||||||||||| || | ||||||| |||||| ||||||||||
Sbjct: 8 aggaagaggaagaaattgagtgtctaagggcaatcggaatgggaacattgaggaaagcct 67
Query: 69 acagtat-tttcttctccactagaattagggg-tggagataattcttttgtgttttccta 126
|||| | ||||| |||||||||| | |||| | ||||||| |||||||||||||||
Sbjct: 68 acagcgtctttctcgtccactagaagtggggggtaaagataatgtttttgtgttttccta 127
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttccttt 172
||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 128 gtgcctcccattcctattgtccttagatactccttcctcttccttt 173
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 73.8 bits (37), Expect = 4e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 176
||||||||| |||| || ||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 114 tgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggc 173
Query: 177 t 177
|
Sbjct: 174 t 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 68
||||||||||||||| |||| ||| |||| ||||||||| | ||| |||||||||||
Sbjct: 8 aggaagaggaagaaagagagtatctcagaattgtgggaatgagaccatgaaggaaagcct 67
Query: 69 a 69
|
Sbjct: 68 a 68
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 120 tttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
||||||||||| |||||||||||||||| |||| | |||||||||||||||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 152
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 69.9 bits (35), Expect = 6e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttgg 175
||||||||| |||| |||||| ||||||||| | |||| ||||||||||||||||||||
Sbjct: 113 tgttttcctgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 171
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagc 66
|||||| |||||||| || ||||||||| |||||||||||||||||| |||||||||
Sbjct: 4 aggaagtggaagaaagagaatgtctaagagcagtgggaatggaaacatgaaggaaagc 61
Score = 48.1 bits (24), Expect = 2e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
||||||||| ||| ||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 86 tgttttcctgatgtctcccattcctacggttcttaggtgctccttcctcttccttt 141
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 61.9 bits (31), Expect = 1e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 113 tttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctcttcctt 171
||||||||||||| |||| |||||||||||||||| || | | |||||||| |||||||
Sbjct: 101 tttgtgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcctt 159
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 60.0 bits (30), Expect = 6e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 112 ttttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctcttcctt 171
||||| || ||||| |||| |||||| ||||| |||||||| | |||||||||||| |||
Sbjct: 80 ttttgggtcttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgctt 139
Query: 172 ttggct 177
||||||
Sbjct: 140 ttggct 145
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacattaaggaaagcct 68
||||||||||||||| ||| | |||||| |||||||||||| ||||| ||||||||||
Sbjct: 8 aggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaagcct 67
Query: 69 a 69
|
Sbjct: 68 a 68
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 56.0 bits (28), Expect = 9e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 112 ttttgtgttttcctaatgcttcccattcctattgttgttagatactccttcctctt 167
|||||||| |||||||||| |||||||||||| ||| |||| | |||||||||||
Sbjct: 76 ttttgtgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 127 atgcttcccattcctattgttgttagatactccttcctcttccttt 172
|||| |||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 126 atgcctcccattcctatcgttcttaggtgctccttcctcttccttt 171
Score = 40.1 bits (20), Expect = 5e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 9 aggaagaggaagaaattgagtgtctaagaacagtgggaatggaaacat 56
||||||||||||||| | |||||||| |||||||||||| |||||
Sbjct: 8 aggaagaggaagaaagaggtagtctaagagcagtgggaatgggaacat 55
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 176
|||||||| |||| |||||| |||||||| |||| | |||||||||||||| ||||||
Sbjct: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 44.1 bits (22), Expect = 4e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 119 ttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttt 172
||||||| |||| |||||||||||| ||| |||| | ||| |||||||| ||||
Sbjct: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctcttacttt 160
>42361_osa-MIR2118q:mirbase
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 149 ttagatactccttcctcttccttt 172
|||| |||||||||||||||||||
Sbjct: 146 ttaggtactccttcctcttccttt 169
