miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 212 bits (107), Expect = 6e-56
Identities = 156/171 (91%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 1 ggtgagccaggaagaggat-agagactctaagagcagtaggaatgggaacatgaaggaaa 59
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgagccaggaagaggaagagagactctaagagcagtaggaatgggaacatgaaggaaa 60
Query: 60 gccaaaccaagctctaactcctggagttggagatttggtataacgattttcctgatgcct 119
|||||| |||||||||| |||| ||||||||||||| | | ||||||||||||||||
Sbjct: 61 gccaaattaagctctaacctctggtattggagatttggtctgatgattttcctgatgcct 120
Query: 120 cccattcctacagttcttaggtccttgttcctcttactttcggctaacacc 170
|||||||||| ||||||||||| || ||||||||||||||| |||||||||
Sbjct: 121 cccattcctatagttcttaggtgctcgttcctcttactttcagctaacacc 171
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 60.0 bits (30), Expect = 6e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttacttt 159
||||||||||| ||||||||||||| |||||||||| || |||||||| ||||
Sbjct: 88 ttttcctgatgtctcccattcctacggttcttaggtgctccttcctcttccttt 141
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaagc 61
|||||||||||| ||||||| |||||||||||||||
Sbjct: 26 tctaagagcagtgggaatggaaacatgaaggaaagc 61
>42843_zma-MIR2118g:mirbase
Length = 145
Score = 58.0 bits (29), Expect = 2e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 6 gccaggaagaggat-agagactctaagagcagtaggaatgggaacatgaaggaaagc 61
|||||||| ||||| | ||| |||||||||| ||||||| |||||||||||||||||
Sbjct: 1 gccaggaaaaggatgaaagattctaagagcactaggaataggaacatgaaggaaagc 57
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattccta 129
|||||||||||||||| |||||||
Sbjct: 88 ttttcctgatgcctcctattccta 111
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcc 62
||||||||||| |||||||||||||| |||||||||
Sbjct: 31 ctaagagcagtgggaatgggaacatggaggaaagcc 66
Score = 46.1 bits (23), Expect = 9e-06
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttc 160
|||||| ||||||||||||||||| ||||||| | ||| |||||||| |||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcctttc 172
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 28 taagagcagtaggaatgggaacatgaaggaaagcc 62
|||||||||| |||||||||||||| |||||||||
Sbjct: 1 taagagcagtgggaatgggaacatggaggaaagcc 35
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 107 tttcctgatgcctcccattcctacagttctta 138
||||| ||||||||||||||||| |||||||
Sbjct: 87 tttcccgatgcctcccattcctattgttctta 118
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 54.0 bits (27), Expect = 3e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttcggct 164
||||||||||||||| |||||||| |||||||||| || |||||||| |||| ||||
Sbjct: 116 ttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttggct 174
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaaag 60
||||||||| ||||||||||||||||| |||||||
Sbjct: 29 tctaagagctgtaggaatgggaacatggaggaaag 63
Score = 50.1 bits (25), Expect = 5e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 107 tttcctgatgcctcccattcctacagttcttaggtccttgttcctcttacttt 159
|||||| |||||||||||||||| |||||||||| || |||||||| ||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttccttt 152
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 54.0 bits (27), Expect = 3e-08
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttc 160
|||||| ||||||||||||||||| |||||||||| || |||||||| |||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcctttc 172
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacat 51
|||||||||||| |||||||||||||
Sbjct: 30 tctaagagcagtgggaatgggaacat 55
>42362_osa-MIR2118r:mirbase
Length = 175
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 114 atgcctcccattcctacagttcttaggt 141
||||||||||| ||||||||||||||||
Sbjct: 122 atgcctcccatgcctacagttcttaggt 149
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaa 58
|||||||||||| || ||||||||||| |||||
Sbjct: 29 tctaagagcagtgggcatgggaacatggaggaa 61
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattccta 129
||||||||||||||||||||||||
Sbjct: 107 ttttcctgatgcctcccattccta 130
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 agcagtaggaatgggaacatgaaggaaagc 61
|||||| |||||||||||||| ||||||||
Sbjct: 37 agcagtgggaatgggaacatggaggaaagc 66
>42349_osa-MIR2118e:mirbase
Length = 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 20 agagactctaagagcagtaggaatgggaacatgaaggaaa 59
||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 24 agagagtctaagagcagcaggcatgggaacatggaggaaa 63
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 atgcctcccattcctacagttcttagg 140
||||||||||| |||||||||||||||
Sbjct: 127 atgcctcccatgcctacagttcttagg 153
>42288_osa-MIR1869:mirbase
Length = 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaaagcc 62
||||||||| |||| ||||||||||| |||||||||
Sbjct: 127 ctaagagcattaggcatgggaacatggaggaaagcc 92
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 108 ttcctgatgcctcccattcctacagttcttaggt 141
||||| |||||||||||||||| ||||||||||
Sbjct: 85 ttcctaatgcctcccattcctatcgttcttaggt 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 26 tctaagagcagtaggaatgggaacatgaaggaa 58
|||||||||||| || ||||||||||| |||||
Sbjct: 21 tctaagagcagtgggcatgggaacatggaggaa 53
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 108 ttcctgatgcctcccattcctacagttcttaggtccttgttcctcttactttcggct 164
||||||||||||||||| |||| ||| |||||| || |||||||| |||| ||||
Sbjct: 89 ttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgcttttggct 145
>42837_zma-MIR2118a:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 108 ttcctgatgcctcccattcctacagttcttagg 140
||||||||||||| |||||||| |||||||||
Sbjct: 86 ttcctgatgcctctcattcctatggttcttagg 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 27 ctaagagcagtaggaatgggaacatgaaggaa 58
||||| |||||||| ||| |||||||||||||
Sbjct: 2 ctaagggcagtagggatgagaacatgaaggaa 33
>42352_osa-MIR2118h:mirbase
Length = 157
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 gtaggaatgggaacatgaaggaaag 60
||||||||| |||||||||||||||
Sbjct: 32 gtaggaatgagaacatgaaggaaag 56
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattccta 129
||||||||||||||| ||||||||
Sbjct: 107 ttttcctgatgcctctcattccta 130
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 106 ttttcctgatgcctcccattccta 129
||||||||||||||||||| ||||
Sbjct: 115 ttttcctgatgcctcccatgccta 138
