miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42362_osa-MIR2118r:mirbase
Length = 175
Score = 65.9 bits (33), Expect = 8e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||||| | | |||||||||||||||| ||||| |||||
Sbjct: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 56.0 bits (28), Expect = 8e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 112 gatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||| ||||||||| | | ||||||||||||||||||
Sbjct: 120 gatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
Score = 50.1 bits (25), Expect = 5e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||| || | ||| |||||||||||| ||||| |||||
Sbjct: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 56.0 bits (28), Expect = 8e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
|||||||||||| || |||||||||| | ||||||||||||||||||
Sbjct: 119 tcctgatgcctctcattcctattgttcttaggtgctccttcctcttcc 166
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 56.0 bits (28), Expect = 8e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
|||| |||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 102 tcctaatgcctcccattcctattgttcttaggtgctccttcctcttcc 149
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 56.0 bits (28), Expect = 8e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||| |||||||||| | |||||||||||| |||||
Sbjct: 110 tcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 157
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 56.0 bits (28), Expect = 8e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct: 118 tcctgatgcctcccatgcctattgttctcagatgctccttcctcttcc 165
Score = 50.1 bits (25), Expect = 5e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||||| | |||| ||||||||||| ||||| |||||
Sbjct: 9 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 61
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctctt 153
||||||||||||||| |||||| ||| | ||||||||||||||||
Sbjct: 90 tcctgatgcctcccatgcctatcgttgttaggtgctccttcctctt 135
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 112 gatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
||||||||||| ||||| |||| | ||||||||||||||||||
Sbjct: 125 gatgcctcccattcctatcgttcttaggtgctccttcctcttcc 168
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 44.1 bits (22), Expect = 3e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaa-agagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||| |||| ||| | |||||||||| ||||| ||||| |||||
Sbjct: 9 ggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaa 62
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 44.1 bits (22), Expect = 3e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctctt 153
||||||||||||||| ||||| |||| | ||||||| ||||||||
Sbjct: 110 tcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
||||||||||| ||||| | | | |||||||||||||||| ||||| |||||
Sbjct: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
>42349_osa-MIR2118e:mirbase
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
|||||||||||||||||| | | | |||||| |||||||| ||||| |||||
Sbjct: 10 ggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaa 62
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 40.1 bits (20), Expect = 5e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
|||||||| |||||| |||| |||| | ||||||||||||||||||
Sbjct: 91 tcctgatgtctcccattcctacggttcttaggtgctccttcctcttcc 138
>42352_osa-MIR2118h:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 5e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 108 tcctgatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
|||||||||||| || ||||| |||| ||||||||||||||||||
Sbjct: 110 tcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
