miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 117 bits (59), Expect = 3e-27
Identities = 145/171 (84%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 1 gtgggtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggagga 60
|||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 1 gtggatcaggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggagga 60
Query: 61 aagttcaaactcttcttcccctcta-aattaggggggtcgactt-gttttgatgttttcc 118
||| ||||||||||||| |||||| || |||||| || || |||| ||||||||
Sbjct: 61 aagcccaaactcttcttcgcctctagaactaggggctgagatttggtttccttgttttcc 120
Query: 119 cgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttgg 169
||||||||||||||||||||| || || |||||||||||||||| |||||
Sbjct: 121 tgatgcctcccatgcctattgttctcagatgctccttcctcttccttttgg 171
>42355_osa-MIR2118k:mirbase
Length = 177
Score = 81.8 bits (41), Expect = 2e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 110 atgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttgg 169
||||||||| |||||||| ||| |||||||| |||||||||||||||||||||| |||||
Sbjct: 113 atgttttcctgatgcctctcattcctattgttcttaggtgctccttcctcttccttttgg 172
Query: 170 c 170
|
Sbjct: 173 c 173
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 77.8 bits (39), Expect = 2e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcc 168
>42362_osa-MIR2118r:mirbase
Length = 175
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
|||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
Score = 54.0 bits (27), Expect = 4e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||| |||||||||||||||| || ||||||| |||||||| |||||
Sbjct: 114 ttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcc 164
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 69.9 bits (35), Expect = 6e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 121 atgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 107 atgcctcccattcctattgttcttaggtgctccttcctcttcc 149
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 atgggaacatggaggaaagt 64
||||||||||||||||||||
Sbjct: 45 atgggaacatggaggaaagt 64
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 67.9 bits (34), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 7 caggaagaggaagaaa-agagtacctaagagtagtgggcatgggaacatggaggaaag 63
|||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||
Sbjct: 7 caggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaaag 64
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||||||||||| ||||| || |||| | || |||||||||||
Sbjct: 118 ttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcc 168
>42349_osa-MIR2118e:mirbase
Length = 177
Score = 67.9 bits (34), Expect = 2e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 5 gtcaggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaaa 62
|||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 6 gtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggaggaaa 63
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||| |||||||||||||||| || |||||| |||||||| |||||
Sbjct: 119 ttttcccaatgcctcccatgcctacagttcttaggcactccttccacttcc 169
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 65.9 bits (33), Expect = 9e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
||||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaa 53
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 121 atgcctcccatgcctattgtccttaggtgctccttcctctt 161
||||||||||| ||||| || |||||||| |||||||||||
Sbjct: 91 atgcctcccattcctatcgttcttaggtgatccttcctctt 131
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 65.9 bits (33), Expect = 9e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||| |||||||||||| |||||||| ||| |||||||||||| |||||
Sbjct: 105 tgttttcctgatgcctcccattcctattgttcttgggtgctccttccccttcc 157
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 agtgggcatgggaacatggaggaaag 63
|||||| |||||||||||||||||||
Sbjct: 40 agtgggaatgggaacatggaggaaag 65
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 63.9 bits (32), Expect = 4e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 115 ttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||| |||||||||||||||||| || ||||||||||||||||||| | ||||||
Sbjct: 89 ttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgcttttggc 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 30 ctaagagtagtgggcatgggaacatggaggaa 61
||||||| |||||||||||||||| |||||||
Sbjct: 27 ctaagagcagtgggcatgggaacacggaggaa 58
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 60.0 bits (30), Expect = 6e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 110 atgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||| |||| ||||||| |||| || ||||||||||||||||||||||
Sbjct: 85 atgttttcctgatgtctcccattcctacggttcttaggtgctccttcctcttcc 138
>42353_osa-MIR2118i:mirbase
Length = 181
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 122 tgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
|||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 129 tgcctcccattcctattgtccttagatactccttcctcttcc 170
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 58.0 bits (29), Expect = 2e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctctt 161
|||||| |||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 107 ttttcctgatgcctcccattcctatagttcttaggtgctcgttcctctt 155
>42359_osa-MIR2118o:mirbase
Length = 155
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 120 gatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||| ||||||||| | | ||||||||||||||||||
Sbjct: 112 gatgcctcccaagcctattgttccttggtgctccttcctcttcc 155
Score = 50.1 bits (25), Expect = 6e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
|||||||||||||||||| || | ||| |||||||||||| ||||| |||||
Sbjct: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
>42288_osa-MIR1869:mirbase
Length = 138
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 20 aaaagagtacctaagagtagtgggcatgggaacatggaggaaag 63
||||||| ||||||||| | | ||||||||||||||||||||||
Sbjct: 137 aaaagagcacctaagagcattaggcatgggaacatggaggaaag 94
Score = 50.1 bits (25), Expect = 6e-07
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctcctt 155
||||||||| || ||||||||||||||||| || ||||| |||||
Sbjct: 45 tgttttcccaatacctcccatgcctattgttctcaggtgttcctt 1
>42352_osa-MIR2118h:mirbase
Length = 157
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 110 atgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||| |||||||| ||| ||||| || || ||||||||||||||||||
Sbjct: 104 atgttttcctgatgcctctcattcctatggttctagggtgctccttcctcttcc 157
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 31 taagagtagtgggcatgggaacatggaggaaag 63
|||||| |||||| |||||||||||||||||||
Sbjct: 1 taagagcagtgggaatgggaacatggaggaaag 33
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 114 tttcccgatgcctcccatgcctattgtcctta 145
|||||||||||||||||| |||||||| ||||
Sbjct: 87 tttcccgatgcctcccattcctattgttctta 118
>42361_osa-MIR2118q:mirbase
Length = 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 112 gttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
||||||||||||||||| || |||| | ||||||| ||||||||||||||
Sbjct: 115 gttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttcc 166
>42356_osa-MIR2118l:mirbase
Length = 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 111 tgttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttccctttggc 170
|||||||| |||| |||||| |||||||| |||| | |||||||||||||| ||||||
Sbjct: 117 tgttttcctaatgcttcccattcctattgttgttagatactccttcctcttccttttggc 176
>42842_zma-MIR2118f:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 31 taagagtagtgggcatgggaacatggaggaaag 63
|||||| ||||||||||||||||| | ||||||
Sbjct: 1 taagagcagtgggcatgggaacataggggaaag 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 114 tttcccgatgcctcccatgcctattgtcctta 145
|||||| |||||| ||||||||||||| ||||
Sbjct: 89 tttcccaatgccttccatgcctattgttctta 120
>42345_osa-MIR2118a:mirbase
Length = 179
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 atgttttcccgatgcctcccatgcctat 137
|||||||| ||||||||||||| |||||
Sbjct: 126 atgttttctcgatgcctcccattcctat 153
