miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42349_osa-MIR2118e:mirbase
Length = 177
Score = 178 bits (90), Expect = 9e-46
Identities = 156/176 (88%), Gaps = 4/176 (2%)
Strand = Plus / Plus
Query: 1 gtgagtcgggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggagga 60
||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 2 gtgagtcaggaagaggaagaaaagagagtctaagagcagcaggcatgggaacatggagga 61
Query: 61 agaac---atgtacttttcttccc-tctaaatttagaggttgagatttgctaagcatttt 116
| || || || |||||||||| |||||| ||||||||||| ||||||| | ||||
Sbjct: 62 aaaaacatatatagttttcttcccctctaaagttagaggttgaaatttgctgtgtgtttt 121
Query: 117 tcccaatgcctcccatgcctacagttcttaggtactccttccccttcctgttggct 172
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 122 tcccaatgcctcccatgcctacagttcttaggcactccttccacttcctgttggct 177
>42348_osa-MIR2118d:mirbase
Length = 176
Score = 89.7 bits (45), Expect = 7e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 9 ggaagaggaagaaaagagggtctgagagcggtgggcatgggaacatggaggaa 61
>42839_zma-MIR2118c:mirbase
Length = 133
Score = 83.8 bits (42), Expect = 4e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaag 62
||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaag 54
>42360_osa-MIR2118p:mirbase
Length = 174
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 9 ggaagaggaagaaaagagtacctaagagtagtgggcatgggaacatggaggaa 61
Score = 54.0 bits (27), Expect = 4e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 114 ttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcc 164
||||||| |||||||||||||||| || ||||||| |||||||| |||||
Sbjct: 113 ttttcccgatgcctcccatgcctattgtccttaggtgctccttcctcttcc 163
>42840_zma-MIR2118d:mirbase
Length = 148
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 23 agagggtctaagagcagtgggcatgggaacatggaggaag 62
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 20 agagggtctaagagcagtgggcatgggaacacggaggaag 59
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 122 atgcctcccatgcctacagttcttaggtactccttccccttcctgttggct 172
|||||||||||||||| ||| |||||| |||||||| ||| || ||||||
Sbjct: 95 atgcctcccatgcctatcgttgttaggtgctccttcctcttgcttttggct 145
>42358_osa-MIR2118n:mirbase
Length = 179
Score = 67.9 bits (34), Expect = 2e-12
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaa-agagggtctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||||| |||| | |||||||||||||| |||||||||||||||||
Sbjct: 9 ggaagaggaagaaagagagagcctaagagcagtgggaatgggaacatggaggaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 113 tttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcct 165
|||||||| ||||||||||| |||| ||||||| | ||| ||||| ||||||
Sbjct: 117 tttttcccgatgcctcccattcctatcgttcttaagcacttcttcctcttcct 169
>42359_osa-MIR2118o:mirbase
Length = 155
Score = 65.9 bits (33), Expect = 9e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||||||||||| | | |||||||||||||||| ||||| |||||
Sbjct: 1 ggaagaggaagaaaagagggccaaggagcagtgggcatggggacatgaaggaa 53
>42351_osa-MIR2118g:mirbase
Length = 160
Score = 60.0 bits (30), Expect = 6e-10
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaaagagggtctaagagcagtgggcatgggaacatggaggaa 61
||||||||||||| | |||||||||||||| || || |||||||||||||||||
Sbjct: 9 gggaagaggaagaca-gagggtctaagagctgtaggaatgggaacatggaggaa 61
Score = 54.0 bits (27), Expect = 4e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 115 tttcccaatgcctcccatgcctacagttcttaggtactccttccccttcct 165
||||| |||||||||||| |||| |||||||||| |||||||| ||||||
Sbjct: 100 tttcctaatgcctcccattcctattgttcttaggtgctccttcctcttcct 150
>42346_osa-MIR2118b:mirbase
Length = 179
Score = 60.0 bits (30), Expect = 6e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 112 atttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcct 165
||||||||| ||||||||||| |||| |||||||||| |||||||| ||||||
Sbjct: 116 atttttcccgatgcctcccattcctatcgttcttaggtgctccttcctcttcct 169
Score = 56.0 bits (28), Expect = 9e-09
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 9 ggaagaggaagaaaagagg--gtctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||||| |||| |||||||||||||||| |||||||||| ||||||
Sbjct: 9 ggaagaggaagaaa-gaggtagtctaagagcagtgggaatgggaacatagaggaa 62
>42361_osa-MIR2118q:mirbase
Length = 177
Score = 56.0 bits (28), Expect = 9e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 114 ttttcccaatgcctcccatgcctacagttcttaggtactccttccccttcct 165
||||||| |||||||| || ||||| | ||||||||||||||||| ||||||
Sbjct: 116 ttttcccgatgcctcctattcctaccgatcttaggtactccttcctcttcct 167
Score = 46.1 bits (23), Expect = 9e-06
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaa-agagggtctaagagcagtgggcatgggaacatggaggaa 61
||||||||||||||| |||| ||||||||| |||| || ||||||||||||||
Sbjct: 8 gggaagaggaagaaagagagcctctaagagcgatgggaataggaacatggaggaa 62
>42838_zma-MIR2118b:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 taagagcagtgggcatgggaacatggaggaa 61
||||||||||||| |||||||||||||||||
Sbjct: 1 taagagcagtgggaatgggaacatggaggaa 31
>42350_osa-MIR2118f:mirbase
Length = 169
Score = 54.0 bits (27), Expect = 4e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 8 gggaagaggaagaaa-agagggtctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||||| ||||||| || ||||||||| |||||||||||||||||
Sbjct: 9 gggaagaggaagaacgagagggttcaatagcagtgggaatgggaacatggaggaa 63
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 122 atgcctcccatgcctacagttcttaggtactccttccccttcct 165
||||||||||| |||| |||||| ||| |||||||||||||||
Sbjct: 115 atgcctcccattcctattgttcttgggtgctccttccccttcct 158
>42842_zma-MIR2118f:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 taagagcagtgggcatgggaacat 54
||||||||||||||||||||||||
Sbjct: 1 taagagcagtgggcatgggaacat 24
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 115 tttcccaatgcctcccatgcctacagttctta 146
||||||||||||| ||||||||| |||||||
Sbjct: 89 tttcccaatgccttccatgcctattgttctta 120
>42357_osa-MIR2118m:mirbase
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 122 atgcctcccatgcctacagttcttaggt 149
||||||||||| ||||||||||||||||
Sbjct: 114 atgcctcccattcctacagttcttaggt 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 29 tctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||| || ||||||||||| |||||
Sbjct: 26 tctaagagcagtaggaatgggaacatgaaggaa 58
>42288_osa-MIR1869:mirbase
Length = 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 30 ctaagagcagtgggcatgggaacatggaggaa 61
||||||||| | ||||||||||||||||||||
Sbjct: 127 ctaagagcattaggcatgggaacatggaggaa 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 114 ttttcccaatgcctcccatgccta 137
|||||||||| |||||||||||||
Sbjct: 43 ttttcccaatacctcccatgccta 20
>42841_zma-MIR2118e:mirbase
Length = 143
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 28 gtctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||||||| |||| |||||| |||||
Sbjct: 25 gtctaagagcagtgggaatggaaacatgaaggaa 58
>42354_osa-MIR2118j:mirbase
Length = 171
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 29 tctaagagcagtgggcatgggaacatggaggaa 61
|||||||||||| || ||||||||||| |||||
Sbjct: 27 tctaagagcagtaggaatgggaacatgaaggaa 59
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 122 atgcctcccatgcctacagttcttaggtactccttcc 158
||||||||||| |||| ||||||||||| ||| ||||
Sbjct: 115 atgcctcccattcctatagttcttaggtgctcgttcc 151
