miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42376_osa-MIR2124g:mirbase
Length = 251
Score = 240 bits (121), Expect = 4e-64
Identities = 184/205 (89%)
Strand = Plus / Plus
Query: 46 taattacatagattgcgtgtaaattgtgaaacgaatcttttaagcctaattgctccatga 105
|||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 47 taattacacagattgcgtgtaaattgcgacacgaatcttttaagcataattgctccatga 106
Query: 106 tctgacaatgtggtgctacagtaaacatttgttaataatggattaatcaggcttaataaa 165
|||||||||||| |||||||||||||||||| |||||| | |||||| || |||||||||
Sbjct: 107 tctgacaatgtgatgctacagtaaacatttgctaataacgaattaattagtcttaataaa 166
Query: 166 ttcgcctcgtagtttacaagtggaatctgtaatttgtttcgttgttagcctacgtttaat 225
|||| |||| ||||||| | ||| ||| |||||||||| ||| |||| |||| ||||||
Sbjct: 167 ttcgtctcgcggtttacaggcggattctctaatttgttttgttattagtctacatttaat 226
Query: 226 actttaaatgtgtgtccgtatattc 250
|||||||||||||||||||||||||
Sbjct: 227 actttaaatgtgtgtccgtatattc 251
>42374_osa-MIR2124e:mirbase
Length = 247
Score = 238 bits (120), Expect = 2e-63
Identities = 218/250 (87%), Gaps = 3/250 (1%)
Strand = Plus / Plus
Query: 1 atgtttagacatatgtatgtagtattaaatatatgaaaaagaaaataattacatagattg 60
|||||| |||| ||| ||| ||||||||||||| |||| ||| ||||||| | ||||
Sbjct: 1 atgtttggacacatgcatggagtattaaatata---aaaaaaaaccaattacacaaattg 57
Query: 61 cgtgtaaattgtgaaacgaatcttttaagcctaattgctccatgatctgacaatgtggtg 120
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 58 cgtgtaaattgcgagacgaatcttttaagcctaattgctccatgatttgacaatgtggtg 117
Query: 121 ctacagtaaacatttgttaataatggattaatcaggcttaataaattcgcctcgtagttt 180
||||| |||||||||| |||| | ||||||| || | ||||||||||| |||| |||||
Sbjct: 118 ctacaataaacatttgctaatgacagattaattagacataataaattcgtctcgcagttt 177
Query: 181 acaagtggaatctgtaatttgtttcgttgttagcctacgtttaatactttaaatgtgtgt 240
| | | ||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 178 ataggcggaatatgtaatttgttttgttattagtctacgtttaatactttaaatgtgtgt 237
Query: 241 ccgtatattc 250
||||||||||
Sbjct: 238 ccgtatattc 247
>42079_osa-MIR442:mirbase
Length = 233
Score = 222 bits (112), Expect = 1e-58
Identities = 200/227 (88%), Gaps = 3/227 (1%)
Strand = Plus / Plus
Query: 16 tatgtagtattaaatata--tgaaaaagaaaa-taattacatagattgcgtgtaaattgt 72
|||| ||||||||||||| ||||||| | || |||||| | |||| |||||||||||
Sbjct: 7 tatggagtattaaatataaatgaaaaaaataactaattatacagatgacgtgtaaattgc 66
Query: 73 gaaacgaatcttttaagcctaattgctccatgatctgacaatgtggtgctacagtaaaca 132
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gagacgaatcttttaagcctaattgctccatgatctgacaatgtggtgctacagtaaaca 126
Query: 133 tttgttaataatggattaatcaggcttaataaattcgcctcgtagtttacaagtggaatc 192
|||| |||| | |||||||| |||||||||||||||| |||| |||||||| ||| ||
Sbjct: 127 tttgctaatgacggattaattaggcttaataaattcgtctcgcagtttacagacggattc 186
Query: 193 tgtaatttgtttcgttgttagcctacgtttaatactttaaatgtgtg 239
|||||||||||| ||| |||| ||||||| ||||||| |||||||||
Sbjct: 187 tgtaatttgttttgttattagtctacgttaaatacttcaaatgtgtg 233
>42370_osa-MIR2124a:mirbase
Length = 249
Score = 212 bits (107), Expect = 1e-55
Identities = 173/195 (88%)
Strand = Plus / Plus
Query: 55 agattgcgtgtaaattgtgaaacgaatcttttaagcctaattgctccatgatctgacaat 114
||||||| ||||||| | || ||||||||||| ||||||||| ||||||| |||||||
Sbjct: 54 agattgcatgtaaatcgcgagacgaatcttttgagcctaattataccatgatttgacaat 113
Query: 115 gtggtgctacagtaaacatttgttaataatggattaatcaggcttaataaattcgcctcg 174
|||||||||||||||| ||||| |||| | |||||||| |||||||||||||| | ||||
Sbjct: 114 gtggtgctacagtaaatatttgctaatgacggattaattaggcttaataaatttgtctcg 173
Query: 175 tagtttacaagtggaatctgtaatttgtttcgttgttagcctacgtttaatactttaaat 234
|||||||| | |||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct: 174 cagtttacaggcggaatctgtaatttgttttgttattagtctacgtttaatactttaaat 233
Query: 235 gtgtgtccgtatatt 249
|||||||||||||||
Sbjct: 234 gtgtgtccgtatatt 248
>42373_osa-MIR2124d:mirbase
Length = 250
Score = 210 bits (106), Expect = 4e-55
Identities = 199/230 (86%)
Strand = Plus / Plus
Query: 21 agtattaaatatatgaaaaagaaaataattacatagattgcgtgtaaattgtgaaacgaa 80
||||||||||||| | |||| ||| |||| || ||| ||||||||||||| || | |||
Sbjct: 21 agtattaaatatagggaaaaaaaaccaatttcacagactgcgtgtaaattgcgagaggaa 80
Query: 81 tcttttaagcctaattgctccatgatctgacaatgtggtgctacagtaaacatttgttaa 140
|||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 81 tcttttaagcctaattgcgctatgatttgacaatgtggtgctacagtaaatatttgctaa 140
Query: 141 taatggattaatcaggcttaataaattcgcctcgtagtttacaagtggaatctgtaattt 200
| | | |||||| |||||||||||||||| |||| ||||| | | ||||||||||||||
Sbjct: 141 tgacgaattaattaggcttaataaattcgactcgcagttttctggcggaatctgtaattt 200
Query: 201 gtttcgttgttagcctacgtttaatactttaaatgtgtgtccgtatattc 250
||| ||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 201 attttgttattagactatgtttaatactttaaatgtgtgtccgtatattc 250
>42372_osa-MIR2124c:mirbase
Length = 248
Score = 206 bits (104), Expect = 6e-54
Identities = 208/240 (86%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 11 atatgtatgtagtattaaatatatgaaaaagaaaataattacatagattgcgtgtaaatt 70
||||||||| | ||||||||||| |||||| ||| ||||||| || || ||||||||||
Sbjct: 11 atatgtatggactattaaatata-gaaaaa-aaaccaattacacagtttacgtgtaaatt 68
Query: 71 gtgaaacgaatcttttaagcctaattgctccatgatctgacaatgtggtgctacagtaaa 130
| || || ||||||||||| |||||||| ||||||| |||||| |||||| |||||||||
Sbjct: 69 gcgagacaaatcttttaagtctaattgcgccatgatttgacaacgtggtggtacagtaaa 128
Query: 131 catttgttaataatggattaatcaggcttaataaattcgcctcgtagtttacaagtggaa 190
||||| |||| || ||||||| |||||||||||||||| |||||||||| | | ||||
Sbjct: 129 tatttgctaatgatagattaattaggcttaataaattcgtctcgtagttttctggcggaa 188
Query: 191 tctgtaatttgtttcgttgttagcctacgtttaatactttaaatgtgtgtccgtatattc 250
|||||||||| ||| ||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct: 189 tctgtaatttattttgttattagacaacgtttaatactttaaatgtgtgtccgtatattc 248
>42377_osa-MIR2124h:mirbase
Length = 275
Score = 157 bits (79), Expect = 5e-39
Identities = 216/263 (82%), Gaps = 14/263 (5%)
Strand = Plus / Plus
Query: 1 atgtttagacatatgtatgtagtattaaatatatgaaaaagaaaataattacatagattg 60
|||||| |||| ||| ||| ||||||||||||| ||||| || |||||||| ||||||
Sbjct: 11 atgtttggacacatgcatggagtattaaatataataaaaataac-taattacacagattg 69
Query: 61 cgtgtaaattgtgaaacgaatcttttaagcctaattgctccatgatctgacaa------- 113
||||||||| || | |||||||||||||||||||||| | |||| ||||||
Sbjct: 70 tgtgtaaattacgagatgaatcttttaagcctaattgcttcttgatttgacaatgtggtg 129
Query: 114 ------tgtggtgctacagtaaacatttgttaataatggattaatcaggcttaataaatt 167
|||||||||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 130 ctacaatgtggtgctacagtaaacatatgctaacgagggattaattaggcttaataaatt 189
Query: 168 cgcctcgtagtttacaagtggaatctgtaatttgtttcgttgttagcctacgtttaatac 227
| |||| |||||||||||||||||||||||||||| || ||| ||| |||||||||
Sbjct: 190 tgtctcgcggtttacaagtggaatctgtaatttgttttattactagtctatgtttaatac 249
Query: 228 tttaaatgtgtgtccgtatattc 250
|||||||||||||||||||||||
Sbjct: 250 tttaaatgtgtgtccgtatattc 272
>42371_osa-MIR2124b:mirbase
Length = 239
Score = 155 bits (78), Expect = 2e-38
Identities = 202/245 (82%), Gaps = 15/245 (6%)
Strand = Plus / Plus
Query: 8 gacatatgtatgtagtattaaatatat--gaaaaagaaaataattacatagattgcgtgt 65
|||| ||| ||| ||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 8 gacacatgcatggagtattaaatatagacgaaaaaataactaattacacagattgcgtgt 67
Query: 66 aaattgtgaaacgaatcttttaagcctaattgctccatgatctgacaatgtggtgctaca 125
|||||| || || ||||||||||| |||||||| ||||||| ||||||| ||||||||||
Sbjct: 68 aaattgcgagacaaatcttttaagtctaattgcgccatgatttgacaatatggtgctaca 127
Query: 126 gtaaacatttgttaataatggattaatcaggcttaataaattcgcctcgtagtttacaag 185
||||||||||| ||||| |||||||| |||||||||||||||| ||| ||||||| |
Sbjct: 128 gtaaacatttgctaataccggattaattaggcttaataaattcgtgtcgcggtttacagg 187
Query: 186 tggaatctgtaatttgtttcgttgttagcctacgtttaatactttaaatgtgtgtccgta 245
||| ||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 188 cgga-------------ttcattattagactacgtttaatactttaaatgtgtgtccgta 234
Query: 246 tattc 250
|||||
Sbjct: 235 tattc 239
>42375_osa-MIR2124f:mirbase
Length = 252
Score = 153 bits (77), Expect = 8e-38
Identities = 164/193 (84%)
Strand = Plus / Plus
Query: 58 ttgcgtgtaaattgtgaaacgaatcttttaagcctaattgctccatgatctgacaatgtg 117
|||| ||||||||| || | ||||||||||| |||||||| ||||||| ||| ||| ||
Sbjct: 60 ttgcatgtaaattgcgagatgaatcttttaactctaattgcgccatgatttgataatatg 119
Query: 118 gtgctacagtaaacatttgttaataatggattaatcaggcttaataaattcgcctcgtag 177
||| |||||||||| |||| |||| || ||||||| || ||||| ||||||| ||| | |
Sbjct: 120 gtgttacagtaaacttttgctaatgatagattaattagccttaacaaattcgtctcttgg 179
Query: 178 tttacaagtggaatctgtaatttgtttcgttgttagcctacgtttaatactttaaatgtg 237
|||||| | ||| ||| ||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 180 tttacaggcggatcctgcaatttgttttgttattagactacgtttaatactttaaatgtg 239
Query: 238 tgtccgtatattc 250
|||||||||||||
Sbjct: 240 tgtccgtatattc 252
>42092_osa-MIR445a:mirbase
Length = 268
Score = 93.7 bits (47), Expect = 6e-20
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 76 acgaatcttttaagcctaattgctccatgatctgacaatgtggtgctacagtaaacattt 135
||||||||||| || |||||| | ||||||| |||||||||| ||||||||||||| |||
Sbjct: 181 acgaatcttttgagtctaattacaccatgatttgacaatgtgatgctacagtaaactttt 122
Query: 136 gttaataatggattaatcaggcttaataaattcgcctcg 174
|||| |||||||||| |||||||| ||||||| ||||
Sbjct: 121 cataattatggattaattaggcttaaaaaattcgtctcg 83
>42094_osa-MIR445c:mirbase
Length = 260
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 76 acgaatcttttaagcctaattgctccatgat 106
||||||||||||||||||||| | |||||||
Sbjct: 169 acgaatcttttaagcctaattacaccatgat 139
