miRNEST 2.0, an integrative microRNA resource :: BLAST
>42468_ssp-MIR159a:mirbase
Length = 261
Score = 250 bits (126), Expect = 4e-67
Identities = 207/231 (89%), Gaps = 6/231 (2%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
|||| |||||||||||||||||||||||||| || | | |||| ||||||||||||||||
Sbjct: 16 agcggagctcctatcattccaatgaagggccgttctgaagggttgttccgctgctcgttc 75
Query: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-ggcccgaga 119
|||||||||||||||||||||||||||||||||||||||||| | | ||| || ||||
Sbjct: 76 atggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagagggaggaga 135
Query: 120 agagat----tcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgagg 175
||| | || |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 136 ggagctagactctcatggtggtc-gtctttgagataggcttgtggtttgcatgaccgagg 194
Query: 176 agctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 226
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 245
>42452_sof-MIR159a:mirbase
Length = 265
Score = 250 bits (126), Expect = 4e-67
Identities = 207/231 (89%), Gaps = 6/231 (2%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
|||| |||||||||||||||||||||||||| || | | |||| ||||||||||||||||
Sbjct: 19 agcggagctcctatcattccaatgaagggccgttctgaagggttgttccgctgctcgttc 78
Query: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-ggcccgaga 119
|||||||||||||||||||||||||||||||||||||||||| | | ||| || ||||
Sbjct: 79 atggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagagggaggaga 138
Query: 120 agagat----tcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgagg 175
||| | || |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggagctagactctcatggtggtc-gtctttgagataggcttgtggtttgcatgaccgagg 197
Query: 176 agctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 226
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 248
>42453_sof-MIR159b:mirbase
Length = 266
Score = 244 bits (123), Expect = 2e-65
Identities = 208/232 (89%), Gaps = 7/232 (3%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
|||| |||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 19 agcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcgttc 78
Query: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactct---agagggccc-g 116
|||||||||||||||||||||||||||||||||||||||||| | | |||||| |
Sbjct: 79 atggttcccactatcctatctcatcatgtatgtgtgtatgtattttcggagagggaggag 138
Query: 117 agaag--agattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgag 174
|| || ||| || ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 139 aggagctagactctcacggtggtc-gtctttgagataggcttgtggtttgcatgaccgag 197
Query: 175 gagctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gagctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 249
>42456_sof-MIR159e:mirbase
Length = 264
Score = 228 bits (115), Expect = 1e-60
Identities = 202/228 (88%), Gaps = 6/228 (2%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
|||| |||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 18 agcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcgttc 77
Query: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-ggcccgaga 119
|||||||||||||||||||||||||||||||||||||||||| | | ||| || ||||
Sbjct: 78 atggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagagggaggaga 137
Query: 120 ag----agattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgagg 175
| ||| || ||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct: 138 ggagctagactctcacggtggtc-gtctttgagataggcttgtggtttgcatgaccgaag 196
Query: 176 agctgcaccgtccccttgctggccgctctttggattgaagggagctct 223
||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 197 agctgcaccgtccccttgctggccgctctttggattgaaaggagctct 244
>42455_sof-MIR159d:mirbase
Length = 265
Score = 220 bits (111), Expect = 4e-58
Identities = 205/233 (87%), Gaps = 10/233 (4%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
|||| |||||||||||||||||||||||||| || | | |||| ||||||||||||||||
Sbjct: 19 agcggagctcctatcattccaatgaagggccgttctgaagggttgttccgctgctcgttc 78
Query: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagag-ggcccgaga 119
|||||||||||||||||||||||||||||||||||||||||| | | ||| || ||||
Sbjct: 79 atggttcccactatcctatctcatcatgtatgtgtgtatgtattttcgagagggaggaga 138
Query: 120 agagat------tcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccga 173
||| | ||||| || ||| |||| ||||||| |||||||||||||||||||||
Sbjct: 139 ggagctagactctcatgggg--gtc-gtctatgagatacgcttgtggtttgcatgaccga 195
Query: 174 ggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgagctgcaccgtccccttgctggccgctctttggattgaagggagctctgca 248
>42695_zma-MIR159f:mirbase
Length = 215
Score = 202 bits (102), Expect = 8e-53
Identities = 194/221 (87%), Gaps = 9/221 (4%)
Strand = Plus / Plus
Query: 6 agctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttcatggt 65
||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct: 3 agctcctctcattccaatgaagggtccttccgaagggtggttccgctgctcgttcatggt 62
Query: 66 tcccactatcctatctcatc-atgtatgtgtgtatgtactctagagggcccgagaagaga 124
|||||||||||||||||||| |||| || |||| | || ||||| || |||||||
Sbjct: 63 tcccactatcctatctcatccatgtttgcgtgtct----tcgagaggaagcg-gaagaga 117
Query: 125 ttcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgaggagctgcacc 184
||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttcctgtggtcgcct---tttgagataggcttgtggtttgcatgaccgaggagctgcacc 174
Query: 185 gtccccttgctggccgctctttggattgaagggagctctgc 225
| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 175 gaccccgtgctggccgctctttggattgaagggagctctgc 215
>42690_zma-MIR159a:mirbase
Length = 246
Score = 165 bits (83), Expect = 2e-41
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 140 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggcc 199
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 202
Query: 200 gctctttggattgaagggagctctgca 226
|||||||||||||||||||||||||||
Sbjct: 203 gctctttggattgaagggagctctgca 229
Score = 107 bits (54), Expect = 4e-24
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcgtt 59
|||| |||||||||||||||||||||||| | || | ||| |||||||||||||||||
Sbjct: 19 agcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgtt 78
Query: 60 catggttcccactatcctatctcatcatgt 89
||||||||||||||||||||||||||||||
Sbjct: 79 catggttcccactatcctatctcatcatgt 108
>41868_far-MIR159:mirbase
Length = 200
Score = 113 bits (57), Expect = 6e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 146 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 205
||||||||| ||||| | ||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 111 gagataggcctgtggctagcatgaccgaggagccgcatcgtcccctcgctggccgctctt 170
Query: 206 tggattgaagggagctctgca 226
|||||||||||||||||||||
Sbjct: 171 tggattgaagggagctctgca 191
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 40 gggtggttccgctgctcgttcatggttcccactatccta 78
||||||| | |||||||||||||||||||||||||||||
Sbjct: 54 gggtggtacagctgctcgttcatggttcccactatccta 92
>42700_zma-MIR159k:mirbase
Length = 200
Score = 109 bits (55), Expect = 9e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 118 ttgagatgggcttgtggtttgcatgaccgaggagctgcatcgtccccttcgttgaccgct 177
Query: 203 ctttggattgaagggagctctgc 225
||||||||||||||||||||||
Sbjct: 178 gtttggattgaagggagctctgc 200
Score = 58.0 bits (29), Expect = 3e-09
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | |||||||||||||||||||||| ||| |||||||||
Sbjct: 35 atgggtggtacaactgctcgttcatggttcccactgtcccatctcatca 83
>42691_zma-MIR159b:mirbase
Length = 221
Score = 103 bits (52), Expect = 6e-23
Identities = 78/84 (92%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| ||||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 203 ctttggattgaagggagctctgca 226
|||||||||||||||||||||||
Sbjct: 181 gtttggattgaagggagctctgca 204
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 56 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>42699_zma-MIR159j:mirbase
Length = 252
Score = 101 bits (51), Expect = 2e-22
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 170 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 229
Query: 203 ctttggattgaagggagctctgc 225
||||||||||||||||||||||
Sbjct: 230 gtttggattgaagggagctctgc 252
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 87 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 135
>42698_zma-MIR159i:mirbase
Length = 252
Score = 93.7 bits (47), Expect = 6e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 170 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 229
Query: 203 ctttggattgaagggagctctgc 225
|||||| |||||||||||||||
Sbjct: 230 gtttggagtgaagggagctctgc 252
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 87 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 135
>42697_zma-MIR159h:mirbase
Length = 200
Score = 93.7 bits (47), Expect = 6e-20
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 118 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 177
Query: 203 ctttggattgaagggagctctgc 225
|||||| |||||||||||||||
Sbjct: 178 gtttggagtgaagggagctctgc 200
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 35 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 83
>41918_osa-MIR159b:mirbase
Length = 188
Score = 89.7 bits (45), Expect = 9e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 146 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 205
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 206 tggattgaagggagctctgca 226
|||||||||||||||||||||
Sbjct: 160 tggattgaagggagctctgca 180
Score = 54.0 bits (27), Expect = 5e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 50 gctgctcgttcatggttcccactatcctatctcat 84
|||||| |||||||||||||||||| |||||||||
Sbjct: 58 gctgcttgttcatggttcccactattctatctcat 92
>41882_hvu-MIR159a:mirbase
Length = 178
Score = 89.7 bits (45), Expect = 9e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 146 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 205
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 98 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 157
Query: 206 tggattgaagggagctctgca 226
|||||||||||||||||||||
Sbjct: 158 tggattgaagggagctctgca 178
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 50 gctgctcgttcatggttcccactatcctatctc 82
|||||| ||||||||||||||||||||||||||
Sbjct: 51 gctgcttgttcatggttcccactatcctatctc 83
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 agctcctatcattccaatgaaggg 29
||||||||||||||||||||||||
Sbjct: 6 agctcctatcattccaatgaaggg 29
>42696_zma-MIR159g:mirbase
Length = 252
Score = 85.7 bits (43), Expect = 1e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 170 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 229
Query: 203 ctttggattgaagggagctctgc 225
|||||| ||||||||| |||||
Sbjct: 230 gtttggagtgaagggagttctgc 252
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 87 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 135
>42634_tae-MIR159a:mirbase
Length = 177
Score = 81.8 bits (41), Expect = 2e-16
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 146 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 205
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 206 tggattgaagggagctctgca 226
|||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgca 176
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 50 gctgctcgttcatggttcccactatcctatctc 82
|||||||||||||||||||||||||||||||||
Sbjct: 50 gctgctcgttcatggttcccactatcctatctc 82
>42635_tae-MIR159b:mirbase
Length = 255
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 201 ctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgca 252
>41917_osa-MIR159a:mirbase
Length = 272
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 201 ctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgca 264
>41916_osa-MIR159a:mirbase
Length = 272
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 201 ctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgca 264
>41883_hvu-MIR159b:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 198 ccgctctttggattgaagggagctctgca 226
||||| |||||||||||||||||||||||
Sbjct: 5 ccgctgtttggattgaagggagctctgca 33
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 150 tctttggattgaagggagctct 171
>40432_gma-MIR159a:mirbase
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>40311_bra-MIR159a:mirbase
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>40261_bna-MIR159:mirbase
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>40017_ath-MIR159b:mirbase
Length = 196
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 166 tctttggattgaagggagctct 187
>40016_ath-MIR159a:mirbase
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>39805_aly-MIR159b:mirbase
Length = 202
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 167 tctttggattgaagggagctct 188
>39804_aly-MIR159a:mirbase
Length = 222
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 181 tctttggattgaagggagctct 202
