miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>42826_zma-MIR399h:mirbase
          Length = 94

 Score = 81.8 bits (41), Expect = 8e-17
 Identities = 83/95 (87%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
          ||||| |||||||||||||| |||| | ||||| ||||||||||| ||||||| | ||||
Sbjct: 1  agtgcagttctcctctggcacgaaccaaggctg-agcagcttgccccatggctagcccac 59

                                             
Query: 61 g---gcccttgcttgccaaaggagaattgccctgc 92
          |   |||||| ||||||||||||||||||||||||
Sbjct: 60 gacggcccttccttgccaaaggagaattgccctgc 94




>42819_zma-MIR399a:mirbase
          Length = 123

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 63  cccttgcttgccaaaggagaattgccctgcc 93
           ||||| |||||||||||||||||||||||||
Sbjct: 76  cccttccttgccaaaggagaattgccctgcc 106



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  agtgcggttctcctctggca 20
          ||||||||||||||||||||
Sbjct: 22 agtgcggttctcctctggca 41




>41803_bdi-MIR399b:mirbase
          Length = 160

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 69  cttgccaaaggagaattgccctgcc 93
           |||||||||||||||||||||||||
Sbjct: 108 cttgccaaaggagaattgccctgcc 132



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  agtgcggttctcctctggca 20
          ||||||||||||||||||||
Sbjct: 30 agtgcggttctcctctggca 49




>41675_vvi-MIR399h:mirbase
          Length = 90

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||||||||||||||
Sbjct: 59 ttgccaaaggagaattgccctgcc 82




>41453_ptc-MIR399f:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgcc 94




>41250_csi-MIR399e:mirbase
          Length = 154

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||||||||||||||
Sbjct: 17 ttgccaaaggagaattgccctgcc 40




>41248_csi-MIR399c:mirbase
          Length = 149

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 70  ttgccaaaggagaattgccctgcc 93
           ||||||||||||||||||||||||
Sbjct: 108 ttgccaaaggagaattgccctgcc 131




>41152_tcc-MIR399g:mirbase
          Length = 112

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgcc 94




>42596_sbi-MIR399h:mirbase
          Length = 132

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 71  tgccaaaggagaattgccctgcc 93
           |||||||||||||||||||||||
Sbjct: 93  tgccaaaggagaattgccctgcc 115



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  agtgcggttctcctctggcatg 22
          ||||||||||||||||||||||
Sbjct: 22 agtgcggttctcctctggcatg 43




>42042_osa-MIR399b:mirbase
          Length = 97

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgccaaaggagaattgccctgcc 93
          |||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgcc 89




>41454_ptc-MIR399g:mirbase
          Length = 94

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgccaaaggagaattgccctgcc 93
          |||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgcc 87




>40383_rco-MIR399a:mirbase
          Length = 93

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 65 cttgcttgccaaaggagaattgccctg 91
          |||||||||||||||||| ||||||||
Sbjct: 62 cttgcttgccaaaggagagttgccctg 88




>42821_zma-MIR399c:mirbase
          Length = 207

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 71  tgccaaaggagaattgccctgc 92
           ||||||||||||||||||||||
Sbjct: 168 tgccaaaggagaattgccctgc 189




>42591_sbi-MIR399c:mirbase
          Length = 130

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 71  tgccaaaggagaattgccctgc 92
           ||||||||||||||||||||||
Sbjct: 91  tgccaaaggagaattgccctgc 112




>42589_sbi-MIR399a:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 71  tgccaaaggagaattgccctgc 92
           ||||||||||||||||||||||
Sbjct: 97  tgccaaaggagaattgccctgc 118




>42043_osa-MIR399c:mirbase
          Length = 110

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 71  tgccaaaggagaattgccctgc 92
           ||||||||||||||||||||||
Sbjct: 80  tgccaaaggagaattgccctgc 101




>42041_osa-MIR399a:mirbase
          Length = 149

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 71  tgccaaaggagaattgccctgc 92
           ||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140




>41150_tcc-MIR399e:mirbase
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 72 gccaaaggagaattgccctgcc 93
          ||||||||||||||||||||||
Sbjct: 78 gccaaaggagaattgccctgcc 99




>41668_vvi-MIR399a:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 71 tgccaaaggagaattgccctg 91
          |||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87




>41063_ghr-MIR399d:mirbase
          Length = 98

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||| ||||||||||
Sbjct: 66 ttgccaaaggagatttgccctgcc 89




>40739_mtr-MIR399i:mirbase
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||| ||||||||||
Sbjct: 64 ttgccaaaggagatttgccctgcc 87




>40738_mtr-MIR399h:mirbase
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 70 ttgccaaaggagaattgccctgcc 93
          ||||||||||||| ||||||||||
Sbjct: 64 ttgccaaaggagatttgccctgcc 87




>40733_mtr-MIR399c:mirbase
          Length = 119

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 70  ttgccaaaggagaattgccctgcc 93
           ||||||||||||| ||||||||||
Sbjct: 79  ttgccaaaggagatttgccctgcc 102