miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>42825_zma-MIR399g:mirbase
          Length = 68

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 34 ccctaccctgccaaaggggatttgcccggc 63
          ||||||||||||||||||||||||||||||
Sbjct: 39 ccctaccctgccaaaggggatttgcccggc 68





>40384_rco-MIR399b:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 39  ccctgccaaaggggatttgcccggc 63
           |||||||||||| ||||||||||||
Sbjct: 78  ccctgccaaaggagatttgcccggc 102





>41672_vvi-MIR399e:mirbase
          Length = 112

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 41  ctgccaaaggggatttgcccggc 63
           |||||||||| ||||||||||||
Sbjct: 81  ctgccaaaggagatttgcccggc 103





>41246_csi-MIR399a:mirbase
          Length = 155

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 41  ctgccaaaggggatttgcccggc 63
           |||||||||| ||||||||||||
Sbjct: 113 ctgccaaaggagatttgcccggc 135





>41149_tcc-MIR399d:mirbase
          Length = 136

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 41  ctgccaaaggggatttgcccggc 63
           |||||||||| ||||||||||||
Sbjct: 95  ctgccaaaggagatttgcccggc 117





>41147_tcc-MIR399b:mirbase
          Length = 135

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 41  ctgccaaaggggatttgcccggc 63
           |||||||||| ||||||||||||
Sbjct: 94  ctgccaaaggagatttgcccggc 116