miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>42464_sof-MIR408c:mirbase
          Length = 286

 Score =  129 bits (65), Expect = 9e-31
 Identities = 145/174 (83%), Gaps = 22/174 (12%)
 Strand = Plus / Plus

                                                                       
Query: 51  atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
           ||||| |||||||||| ||||||| ||||||| ||||   ||||| ||||||||||| ||
Sbjct: 98  atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 154

                                                                       
Query: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
           ||       ||||||||||||||||| ||||||||||||||            |||||||
Sbjct: 155 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagct 214

                                                                 
Query: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 268



 Score = 73.8 bits (37), Expect = 5e-14
 Identities = 51/55 (92%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                 
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
          ||||||| |||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 73




>42463_sof-MIR408b:mirbase
          Length = 286

 Score =  127 bits (64), Expect = 4e-30
 Identities = 96/109 (88%), Gaps = 12/109 (11%)
 Strand = Plus / Plus

                                                                       
Query: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
           ||||||||||||||||||||| ||||||||||||||            ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219

                                                            
Query: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 268



 Score = 73.8 bits (37), Expect = 5e-14
 Identities = 51/55 (92%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                 
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
          ||||||| |||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 73




>42474_ssp-MIR408d:mirbase
          Length = 180

 Score =  113 bits (57), Expect = 5e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                       
Query: 145 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 204
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 119 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 178

            
Query: 205 t 205
           |
Sbjct: 179 t 179



 Score =  111 bits (56), Expect = 2e-25
 Identities = 70/74 (94%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
          |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 4  acagggacgaggcagagcatgggatggggccat---caacaaaatttccaatttccgttt 60

                        
Query: 61 gcttgcccacaaaa 74
          |||||| |||||||
Sbjct: 61 gcttgctcacaaaa 74




>42465_sof-MIR408d:mirbase
          Length = 215

 Score =  113 bits (57), Expect = 5e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                       
Query: 145 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 204
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 196

            
Query: 205 t 205
           |
Sbjct: 197 t 197



 Score =  111 bits (56), Expect = 2e-25
 Identities = 70/74 (94%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
          |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 22 acagggacgaggcagagcatgggatggggccat---caacaaaatttccaatttccgttt 78

                        
Query: 61 gcttgcccacaaaa 74
          |||||| |||||||
Sbjct: 79 gcttgctcacaaaa 92




>42473_ssp-MIR408a:mirbase
          Length = 248

 Score =  101 bits (51), Expect = 2e-22
 Identities = 142/174 (81%), Gaps = 25/174 (14%)
 Strand = Plus / Plus

                                                                       
Query: 51  atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
           ||||| |||||||||| ||||||| ||||||| ||||   ||||| ||||||||||| ||
Sbjct: 80  atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 136

                                                                       
Query: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
           ||       ||||||||||||||||| ||||||||||||||            |||||||
Sbjct: 137 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagct 196

                                                                 
Query: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 197 cagctggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggct 247



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 50/55 (90%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                 
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
          ||||||| |||||||||||||||||| ||||||   |||||||||||||||||||
Sbjct: 4  acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 55




>42462_sof-MIR408a:mirbase
          Length = 283

 Score =  101 bits (51), Expect = 2e-22
 Identities = 142/174 (81%), Gaps = 25/174 (14%)
 Strand = Plus / Plus

                                                                       
Query: 51  atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
           ||||| |||||||||| ||||||| ||||||| ||||   ||||| ||||||||||| ||
Sbjct: 98  atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 154

                                                                       
Query: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
           ||       ||||||||||||||||| ||||||||||||||            |||||||
Sbjct: 155 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagct 214

                                                                 
Query: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 215 cagctggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggct 265



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 50/55 (90%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                 
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
          ||||||| |||||||||||||||||| ||||||   |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73




>42466_sof-MIR408e:mirbase
          Length = 283

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 90/109 (82%), Gaps = 15/109 (13%)
 Strand = Plus / Plus

                                                                       
Query: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
           ||||||||||||||||||||| ||||||||||||||            ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggatgagagctcagct 219

                                                            
Query: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
           |||||||||   ||||||||| || |||||||||| |||||||||||||
Sbjct: 220 ggtgtcctg---ttgttgcttacttccctgcactgactcttccctggct 265



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 50/55 (90%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                 
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
          ||||||| |||||||||||||||||| ||||||   |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73




>42829_zma-MIR408:mirbase
          Length = 191

 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
           ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggct 173



 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                 
Query: 1  acagggacgaggcagagcatgggatggggccatcaacaa 39
          ||||||| ||| |||||||||||||||||||||||||||
Sbjct: 22 acagggatgagacagagcatgggatggggccatcaacaa 60




>42052_osa-MIR408:mirbase
          Length = 213

 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 167 tgttgttgcttcctcccctgcactgcctcttccctggct 205
           |||||||||| ||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggct 174



 Score = 60.0 bits (30), Expect = 7e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  acagggacgaggcagagcatgggatggggccatcaaca 38
          ||||||| |||||||||||||||||||||| |||||||
Sbjct: 30 acagggatgaggcagagcatgggatggggctatcaaca 67




>42830_zma-MIR408b:mirbase
          Length = 147

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 168 gttgttgcttcctcccctgcactgcctcttccctggct 205
           ||||||||| ||||||||||||||||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggct 146



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 37/39 (94%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                 
Query: 1  acagggacgaggcagagcatggg-atggggccatcaaca 38
          ||||||||||||||||||||||| | |||||||||||||
Sbjct: 2  acagggacgaggcagagcatgggtagggggccatcaaca 40




>42647_tae-MIR408:mirbase
          Length = 187

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 37/39 (94%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 167 tgttgttgcttcctcccctgcactgcctcttccctggct 205
           |||||||||| |||||| |||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggct 157




>41252_csi-MIR408:mirbase
          Length = 153

 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 177 tcctcccctgcactgcctcttccctggct 205
           ||||||| |||||||||||||||||||||
Sbjct: 113 tcctcccatgcactgcctcttccctggct 141




>40391_rco-MIR408:mirbase
          Length = 92

 Score = 50.1 bits (25), Expect = 7e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 181 cccctgcactgcctcttccctggct 205
           |||||||||||||||||||||||||
Sbjct: 64  cccctgcactgcctcttccctggct 88




>41683_vvi-MIR408:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 78  tgcactgcctcttccctggct 98




>41463_ptc-MIR408:mirbase
          Length = 105

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 77  tgcactgcctcttccctggct 97




>41193_aqc-MIR408:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 21  tgcactgcctcttccctggct 1




>40405_ahy-MIR408:mirbase
          Length = 122

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 82  tgcactgcctcttccctggct 102




>40404_ahy-MIR408:mirbase
          Length = 122

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 82  tgcactgcctcttccctggct 102




>40108_ath-MIR408:mirbase
          Length = 218

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggct 141




>39897_aly-MIR408:mirbase
          Length = 211

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 118 tgcactgcctcttccctggct 138




>39742_smo-MIR408:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 77  tgcactgcctcttccctggct 97




>39490_ppt-MIR408b:mirbase
          Length = 144

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 94  tgcactgcctcttccctggct 114




>39428_pta-MIR408:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 185 tgcactgcctcttccctggct 205
           |||||||||||||||||||||
Sbjct: 65  tgcactgcctcttccctggct 85