miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41218_csi-MIR159:mirbase
Length = 216
Score = 381 bits (192), Expect = e-106
Identities = 211/215 (98%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 1 gggttaaggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggttaaggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagct 60
Query: 61 gctgagctatggatcccacagtcctatgtatcagattttagggtttgtttctgatgatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgagctatggatcccacagtcctatgtatcagattttagggtttgtttctgatgatgg 120
Query: 121 tgatgataggcttgtggcttgcatatttctggagcttcattaccccttaag-ttttaccc 179
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 121 tgatgataggcttgtggcttgcatatttctggaccttcattaccccttaagtttttaccc 180
Query: 180 --ttttttggattgaagggagctctacctctctac 212
|||||||||||||||||||||||||||||||||
Sbjct: 181 ctttttttggattgaagggagctctacctctctac 215
>40338_rco-MIR159:mirbase
Length = 180
Score = 93.7 bits (47), Expect = 5e-20
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 9 gagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagct 68
||||||||||||||||||||||| ||||| ||| | | ||||| ||||||||||||||||
Sbjct: 1 gagtggagctccttgaagtccaatagaggatcttg-atgggtagattgagctgctgagct 59
Query: 69 atggatcccacagtcctat 87
||||||||||||| |||||
Sbjct: 60 atggatcccacagccctat 78
Score = 65.9 bits (33), Expect = 1e-11
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 125 gataggcttgtggcttgcatatttctggagcttcattaccccttaagttttacccttttt 184
|||||||||||||||||||||| || |||||||||||| |||| || | |||| ||
Sbjct: 99 gataggcttgtggcttgcatatctcaggagcttcatta--ccttgtattagatccttgtt 156
Query: 185 tggattgaagggagctctac 204
||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctac 176
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 83.8 bits (42), Expect = 5e-17
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagc 65
Query: 68 tatggatcccacagtcctatgtatca 93
||||||| |||||||||||| |||||
Sbjct: 66 tatggat-ccacagtcctatctatca 90
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 181 tttttggattgaagggagctcta 203
|||||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctcta 174
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 83.8 bits (42), Expect = 5e-17
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||||||| || ||||| ||| ||||||| |||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagc 65
Query: 68 tatggatcccacagtcctatgtatca 93
||||||| |||||||||||| |||||
Sbjct: 66 tatggat-ccacagtcctatctatca 90
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 181 tttttggattgaagggagctcta 203
|||||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctcta 174
>40397_ahy-MIR159:mirbase
Length = 197
Score = 73.8 bits (37), Expect = 5e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 agtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagcta 69
|||||||||||||||||||||| ||||| ||| | ||||| ||||||||||| |||||
Sbjct: 1 agtggagctccttgaagtccaacagagggtcttggt-gggtagattgagctgctaagcta 59
Query: 70 tggatcccacagt 82
|||||||||||||
Sbjct: 60 tggatcccacagt 72
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 178 ccttttttggattgaagggagctctac 204
|||| ||||||||||||||||||||||
Sbjct: 152 ccttatttggattgaagggagctctac 178
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 71.9 bits (36), Expect = 2e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||||| ||| | ||||| |||||||||||||
Sbjct: 5 ggagtggagctccttgaagtccaatagagggtcttac-tgggtagattgagctgctgact 63
Query: 68 tatggatcccacagtcctat 87
|||||||||||||| |||||
Sbjct: 64 tatggatcccacagccctat 83
Score = 61.9 bits (31), Expect = 2e-10
Identities = 70/81 (86%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 125 gataggcttgtggcttgcatatttctggagcttcattaccccttaagttt-taccctttt 183
|||||||||||||||||||||| || |||||| ||||| || |||||| | |||| |
Sbjct: 104 gataggcttgtggcttgcatatctcaggagctgcattatcc---aagtttagatccttgt 160
Query: 184 ttggattgaagggagctctac 204
|||||||||||||||||||||
Sbjct: 161 ttggattgaagggagctctac 181
>40432_gma-MIR159a:mirbase
Length = 214
Score = 65.9 bits (33), Expect = 1e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 agtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagcta 69
|||||||||||||||||||||| |||| ||| | |||| |||||||||||| |||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttact-gggtgaattgagctgcttagcta 77
Query: 70 tggatcccacagt 82
|||||||||||||
Sbjct: 78 tggatcccacagt 90
Score = 61.9 bits (31), Expect = 2e-10
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 131 cttgtggcttgcatatttctggagcttcattacccctta-agttttacccttttttggat 189
|||||||||| ||||||| ||||||||||| || ||| ||| ||| |||| |||||||
Sbjct: 122 cttgtggcttccatatttggggagcttcatttgcctttatagtattaaccttctttggat 181
Query: 190 tgaagggagctctac 204
|||||||||||||||
Sbjct: 182 tgaagggagctctac 196
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 63.9 bits (32), Expect = 5e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67
|||||||||||||||||||||||| ||| | || || ||||| || ||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaagctcctgct-gggtagatcgagctgctgagc 65
Query: 68 tatggatcccacagtcctat 87
|||| ||||||||| |||||
Sbjct: 66 tatgaatcccacagccctat 85
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 180 ttttttggattgaagggagctcta 203
||||||||||||||||||||||||
Sbjct: 155 ttttttggattgaagggagctcta 178
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 56.0 bits (28), Expect = 1e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctat 70
||||||||||||||||||||| |||| ||| | |||| ||||||||||| ||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttact-gggtggattgagctgcttagctat 59
Query: 71 ggatcccacagt 82
||||||||||||
Sbjct: 60 ggatcccacagt 71
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 178 ccttttttggattgaagggagctctac 204
|||| ||||||||||||||||||||||
Sbjct: 148 ccttctttggattgaagggagctctac 174
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 56.0 bits (28), Expect = 1e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctat 70
||||||||||||||||||||| |||| ||| | |||| ||||||||||| ||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttact-gggtggattgagctgcttagctat 59
Query: 71 ggatcccacagt 82
||||||||||||
Sbjct: 60 ggatcccacagt 71
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 178 ccttttttggattgaagggagctctac 204
|||| ||||||||||||||||||||||
Sbjct: 148 ccttctttggattgaagggagctctac 174
>40435_gma-MIR159d:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 47 gggtaaattgagctgctgagctatggatcccacagt 82
|||| |||||||||||| ||||||||||||||||||
Sbjct: 1 gggtgaattgagctgcttagctatggatcccacagt 36
>40311_bra-MIR159a:mirbase
Length = 185
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 172 ttttacccttttttggattgaagggagctctac 204
|||||| ||| ||||||||||||||||||||||
Sbjct: 152 ttttactcttctttggattgaagggagctctac 184
>40261_bna-MIR159:mirbase
Length = 183
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 172 ttttacccttttttggattgaagggagctctac 204
|||||| ||| ||||||||||||||||||||||
Sbjct: 150 ttttactcttctttggattgaagggagctctac 182
>40016_ath-MIR159a:mirbase
Length = 184
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 172 ttttacccttttttggattgaagggagctctac 204
|||||| ||| ||||||||||||||||||||||
Sbjct: 152 ttttactcttctttggattgaagggagctctac 184
>39804_aly-MIR159a:mirbase
Length = 222
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 172 ttttacccttttttggattgaagggagctctac 204
|||||| ||| ||||||||||||||||||||||
Sbjct: 172 ttttactcttctttggattgaagggagctctac 204
>41528_sly-MIR159:mirbase
Length = 177
Score = 48.1 bits (24), Expect = 3e-06
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 12 tggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctatg 71
|||||||||||||||||||| | | |||| || || |||||||||||||||| |||||
Sbjct: 1 tggagctccttgaagtccaacaaaaaatctaaca-ggttaaattgagctgctgacctatg 59
Query: 72 gatcccacagtcctat 87
||| || ||| |||||
Sbjct: 60 gattcctcagccctat 75
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 180 ttttttggattgaagggagctcta 203
||||||||||||||||||||||||
Sbjct: 154 ttttttggattgaagggagctcta 177
